Defense Notices


All students and faculty are welcome to attend the final defense of EECS graduate students completing their M.S. or Ph.D. degrees. Defense notices for M.S./Ph.D. presentations for this year and several previous years are listed below in reverse chronological order.

Students who are nearing the completion of their M.S./Ph.D. research should schedule their final defenses through the EECS graduate office at least THREE WEEKS PRIOR to their presentation date so that there is time to complete the degree requirements check, and post the presentation announcement online.

Upcoming Defense Notices

Ye Wang

Deceptive Signals: Unveiling and Countering Sensor Spoofing Attacks on Cyber Systems

When & Where:


Nichols Hall, Room 250 (Gemini Room)

Committee Members:

Fengjun Li, Chair
Drew Davidson
Rongqing Hui
Bo Luo
Haiyang Chao

Abstract

In modern computer systems, sensors play a critical role in enabling a wide range of functionalities, from navigation in autonomous vehicles to environmental monitoring in smart homes. Acting as an interface between physical and digital worlds, sensors collect data to drive automated functionalities and decision-making. However, this reliance on sensor data introduces significant potential vulnerabilities, leading to various physical, sensor-enabled attacks such as spoofing, tampering, and signal injection. Sensor spoofing attacks, where adversaries manipulate sensor input or inject false data into target systems, pose serious risks to system security and privacy.

In this work, we have developed two novel sensor spoofing attack methods that significantly enhance both efficacy and practicality. The first method employs physical signals that are imperceptible to humans but detectable by sensors. Specifically, we target deep learning based facial recognition systems using infrared lasers. By leveraging advanced laser modeling, simulation-guided targeting, and real-time physical adjustments, our infrared laser-based physical adversarial attack achieves high success rates with practical real-time guarantees, surpassing the limitations of prior physical perturbation attacks. The second method embeds physical signals, which are inherently present in the system, into legitimate patterns. In particular, we integrate trigger signals into standard operational patterns of actuators on mobile devices to construct remote logic bombs, which are shown to be able to evade all existing detection mechanisms. Achieving a zero false-trigger rate with high success rates, this novel sensor bomb is highly effective and stealthy.

Our study on emerging sensor-based threats highlights the urgent need for comprehensive defenses against sensor spoofing. Along this direction, we design and investigate two defense strategies to mitigate these threats. The first strategy involves filtering out physical signals identified as potential attack vectors. The second strategy is to leverage beneficial physical signals to obfuscate malicious patterns and reinforce data integrity. For example, side channels targeting the same sensor can be used to introduce cover signals that prevent information leakage, while environment-based physical signals serve as signatures to authenticate data. Together, these strategies form a comprehensive defense framework that filters harmful sensor signals and utilizes beneficial ones, significantly enhancing the overall security of cyber systems.


Sravan Reddy Chintareddy

Combating Spectrum Crunch with Efficient Machine-Learning Based Spectrum Access and Harnessing High-frequency Bands for Next-G Wireless Networks

When & Where:


Nichols Hall, Room 246 (Executive Conference Room)

Committee Members:

Morteza Hashemi, Chair
Victor Frost
Erik Perrins
Dongjie Wang
Shawn Keshmiri

Abstract

There is an increasing trend in the number of wireless devices that is now already over 14 billion and is expected to grow to 40 billion devices by 2030. In addition, we are witnessing an unprecedented proliferation of applications and technologies with wireless connectivity requirements such as unmanned aerial vehicles, connected health, and radars for autonomous vehicles. The advent of new wireless technologies and devices will only worsen the current spectrum crunch that service providers and wireless operators are already experiencing. In this PhD study, we address these challenges through the following research thrusts, in which we consider two emerging applications aimed at advancing spectrum efficiency and high-frequency connectivity solutions.

 

First, we focus on effectively utilizing the existing spectrum resources for emerging applications such as networked UAVs operating within the Unmanned Traffic Management (UTM) system. In this thrust, we develop a coexistence framework for UAVs to share spectrum with traditional cellular networks by using machine learning (ML) techniques so that networked UAVs act as secondary users without interfering with primary users. We propose federated learning (FL) and reinforcement learning (RL) solutions to establish a collaborative spectrum sensing and dynamic spectrum allocation framework for networked UAVs. In the second part, we explore the potential of millimeter-wave (mmWave) and terahertz (THz) frequency bands for high-speed data transmission in urban settings. Specifically, we investigate THz-based midhaul links for 5G networks, where a network's central units (CUs) connect to distributed units (DUs). Through numerical analysis, we assess the feasibility of using 140 GHz links and demonstrate the merits of high-frequency bands to support high data rates in midhaul networks for future urban communications infrastructure. Overall, this research is aimed at establishing frameworks and methodologies that contribute toward the sustainable growth and evolution of wireless connectivity.


Agraj Magotra

Data-Driven Insights into Sustainability: An Artificial Intelligence (AI) Powered Analysis of ESG Practices in the Textile and Apparel Industry

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Sumaiya Shomaji, Chair
Prasad Kulkarni
Zijun Yao


Abstract

The global textile and apparel (T&A) industry is under growing scrutiny for its substantial environmental and social impact, producing 92 million tons of waste annually and contributing to 20% of global water pollution. In Bangladesh, one of the world's largest apparel exporters, the integration of Environmental, Social, and Governance (ESG) practices is critical to meet international sustainability standards and maintain global competitiveness. This master's study leverages Artificial Intelligence (AI) and Machine Learning (ML) methodologies to comprehensively analyze unstructured corporate data related to ESG practices among LEED-certified Bangladeshi T&A factories. 

Our study employs advanced techniques, including Web Scraping, Natural Language Processing (NLP), and Topic Modeling, to extract and analyze sustainability-related information from factory websites. We develop a robust ML framework that utilizes Non-Negative Matrix Factorization (NMF) for topic extraction and a Random Forest classifier for ESG category prediction, achieving an 86% classification accuracy. The study uncovers four key ESG themes: Environmental Sustainability, Social : Workplace Safety and Compliance, Social: Education and Community Programs, and Governance. The analysis reveals that 46% of factories prioritize environmental initiatives, such as energy conservation and waste management, while 44% emphasize social aspects, including workplace safety and education. Governance practices are significantly underrepresented, with only 10% of companies addressing ethical governance, healthcare provisions and employee welfare.

To deepen our understanding of the ESG themes, we conducted a Centrality Analysis to identify the most influential keywords within each category, using measures such as degree, closeness, and eigenvector centrality. Furthermore, our analysis reveals that higher certification levels, like Platinum, are associated with a more balanced emphasis on environmental, social, and governance practices, while lower levels focus primarily on environmental efforts. These insights highlight key areas where the industry can improve and inform targeted strategies for enhancing ESG practices. Overall, this ML framework provides a data-driven, scalable approach for analyzing unstructured corporate data and promoting sustainability in Bangladesh’s T&A sector, offering actionable recommendations for industry stakeholders, policymakers, and global brands committed to responsible sourcing.


Shalmoli Ghosh

High-Power Fabry-Perot Quantum-Well Laser Diodes for Application in Multi-Channel Coherent Optical Communication Systems

When & Where:


Nichols Hall, Room 246 (Executive Conference Room)

Committee Members:

Rongqing Hui , Chair
Shannon Blunt
Jim Stiles


Abstract

Wavelength Division Multiplexing (WDM) is essential for managing rapid network traffic growth in fiber optic systems. Each WDM channel demands a narrow-linewidth, frequency-stabilized laser diode, leading to complexity and increased energy consumption. Multi-wavelength laser sources, generating optical frequency combs (OFC), offer an attractive solution, enabling a single laser diode to provide numerous equally spaced spectral lines for enhanced bandwidth efficiency.

Quantum-dot and quantum-dash OFCs provide phase-synchronized lines with low relative intensity noise (RIN), while Quantum Well (QW) OFCs offer higher power efficiency, but they have higher RIN in the low frequency region of up to 2 GHz. However, both quantum-dot/dash and QW based OFCs, individual spectral lines exhibit high phase noise, limiting coherent detection. Output power levels of these OFCs range between 1-20 mW where the power of each spectral line is typically less than -5 dBm. Due to this requirement, these OFCs require excessive optical amplification, also they possess relatively broad spectral linewidths of each spectral line, due to the inverse relationship between optical power and linewidth as per the Schawlow-Townes formula. This constraint hampers their applicability in coherent detection systems, highlighting a challenge for achieving high-performance optical communication.

In this work, coherent system application of a single-section Quantum-Well Fabry-Perot (FP) laser diode is demonstrated. This laser delivers over 120 mW optical power at the fiber pigtail with a mode spacing of 36.14 GHz. In an experimental setup, 20 spectral lines from a single laser transmitter carry 30 GBaud 16-QAM signals over 78.3 km single-mode fiber, achieving significant data transmission rates. With the potential to support a transmission capacity of 2.15 Tb/s (4.3 Tb/s for dual polarization) per transmitter, including Forward Error Correction (FEC) and maintenance overhead, it offers a promising solution for meeting the escalating demands of modern network traffic efficiently.


Anissa Khan

Privacy Preserving Biometric Matching

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Perry Alexander, Chair
Prasad Kulkarni
Fengjun Li


Abstract

Biometric matching is a process by which distinct features are used to identify an individual. Doing so privately is important because biometric data, such as fingerprints or facial features, is not something that can be easily changed or updated if put at risk. In this study, we perform a piece of the biometric matching process in a privacy preserving manner by using secure multiparty computation (SMPC). Using SMPC allows the identifying biological data, called a template, to remain stored by the data owner during the matching process. This provides security guarantees to the biological data while it is in use and therefore reduces the chances the data is stolen. In this study, we find that performing biometric matching using SMPC is just as accurate as performing the same match in plaintext.

 


Bryan Richlinski

Prioritize Program Diversity: Enumerative Synthesis with Entropy Ordering

When & Where:


Nichols Hall, Room 246 (Executive Conference Room)

Committee Members:

Sankha Guria, Chair
Perry Alexander
Drew Davidson
Jennifer Lohoefener

Abstract

Program synthesis is a popular way to create a correct-by-construction program from a user-provided specification. Term enumeration is a leading technique to systematically explore the space of programs by generating terms from a formal grammar. These terms are treated as candidate programs which are tested/verified against the specification for correctness. In order to prioritize candidates more likely to satisfy the specification, enumeration is often ordered by program size or other domain-specific heuristics. However, domain-specific heuristics require expert knowledge, and enumeration by size often leads to terms comprised of frequently repeating symbols that are less likely to satisfy a specification. In this thesis, we build a heuristic that prioritizes term enumeration based on variability of individual symbols in the program, i.e., information entropy of the program. We use this heuristic to order programs in both top-down and bottom-up enumeration. We evaluated our work on a subset of the PBE-String track of the 2017 SyGuS competition benchmarks and compared against size-based enumeration. In top-down enumeration, our entropy heuristic shortens runtime in ~56% of cases and tests fewer programs in ~80% before finding a valid solution. For bottom-up enumeration, our entropy heuristic improves the number of enumerated programs in ~30% of cases before finding a valid solution, without improving the runtime. Our findings suggest that using entropy to prioritize program enumeration is a promising step forward for faster program synthesis.


Elizabeth Wyss

A New Frontier for Software Security: Diving Deep into npm

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Drew Davidson, Chair
Alex Bardas
Fengjun Li
Bo Luo
J. Walker

Abstract

Open-source package managers (e.g., npm for Node.js) have become an established component of modern software development. Rather than creating applications from scratch, developers may employ modular software dependencies and frameworks--called packages--to serve as building blocks for writing larger applications. Package managers make this process easy. With a simple command line directive, developers are able to quickly fetch and install packages across vast open-source repositories. npm--the largest of such repositories--alone hosts millions of unique packages and serves billions of package downloads each week. 

 

However, the widespread code sharing resulting from open-source package managers also presents novel security implications. Vulnerable or malicious code hiding deep within package dependency trees can be leveraged downstream to attack both software developers and the users of their applications. This downstream flow of software dependencies--dubbed the software supply chain--is critical to secure.

 

This research provides a deep dive into the npm-centric software supply chain, exploring various facets and phenomena that impact the security of this software supply chain. Such factors include (i) hidden code clones--which obscure provenance and can stealthily propagate known vulnerabilities, (ii) install-time attacks enabled by unmediated installation scripts, (iii) hard-coded URLs residing in package code, (iv) the impacts open-source development practices, and (v) package compromise via malicious updates. For each facet, tooling is presented to identify and/or mitigate potential security impacts. Ultimately, it is our hope that this research fosters greater awareness, deeper understanding, and further efforts to forge a new frontier for the security of modern software supply chains. 


Jagadeesh Sai Dokku

Intelligent Chat Bot for KU Website: Automated Query Response and Resource Navigation

When & Where:


Eaton Hall, Room 2001B

Committee Members:

David Johnson, Chair
Prasad Kulkarni
Hongyang Sun


Abstract

This project introduces an intelligent chatbot designed to improve user experience on our university website by providing instant, automated responses to common inquiries. Navigating a university website can be challenging for students, applicants, and visitors who seek quick information about admissions, campus services, events, and more. To address this challenge, we developed a chatbot that simulates human conversation using Natural Language Processing (NLP), allowing users to find information more efficiently. The chatbot is powered by a Bidirectional Long Short-Term Memory (BiLSTM) model, an architecture well-suited for understanding complex sentence structures. This model captures contextual information from both directions in a sentence, enabling it to identify user intent with high accuracy. We trained the chatbot on a dataset of intent-labeled queries, enabling it to recognize specific intentions such as asking about campus facilities, academic programs, or event schedules. The NLP pipeline includes steps like tokenization, lemmatization, and vectorization. Tokenization and lemmatization prepare the text by breaking it into manageable units and standardizing word forms, making it easier for the model to recognize similar word patterns. The vectorization process then translates this processed text into numerical data that the model can interpret. Flask is used to manage the backend, allowing seamless communication between the user interface and the BiLSTM model. When a user submits a query, Flask routes the input to the model, processes the prediction, and delivers the appropriate response back to the user interface. This chatbot demonstrates a successful application of NLP in creating interactive, efficient, and user-friendly solutions. By automating responses, it reduces reliance on manual support and ensures users can access relevant information at any time. This project highlights how intelligent chatbots can transform the way users interact with university websites, offering a faster and more engaging experience.

 


Anahita Memar

Optimizing Protein Particle Classification: A Study on Smoothing Techniques and Model Performance

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Prasad Kulkarni, Chair
Hossein Saiedian
Prajna Dhar


Abstract

This thesis investigates the impact of smoothing techniques on enhancing classification accuracy in protein particle datasets, focusing on both binary and multi-class configurations across three datasets. By applying methods including Averaging-Based Smoothing, Moving Average, Exponential Smoothing, Savitzky-Golay, and Kalman Smoothing, we sought to improve performance in Random Forest, Decision Tree, and Neural Network models. Initial baseline accuracies revealed the complexity of multi-class separability, while clustering analyses provided valuable insights into class similarities and distinctions, guiding our interpretation of classification challenges.

These results indicate that Averaging-Based Smoothing and Moving Average techniques are particularly effective in enhancing classification accuracy, especially in configurations with marked differences in surfactant conditions. Feature importance analysis identified critical metrics, such as IntMean and IntMax, which played a significant role in distinguishing classes. Cross-validation validated the robustness of our models, with Random Forest and Neural Network consistently outperforming others in binary tasks and showing promising adaptability in multi-class classification. This study not only highlights the efficacy of smoothing techniques for improving classification in protein particle analysis but also offers a foundational approach for future research in biopharmaceutical data processing and analysis.


Yousif Dafalla

Web-Armour: Mitigating Reconnaissance and Vulnerability Scanning with Injecting Scan-Impeding Delays in Web Deployments

When & Where:


Nichols Hall, Room 246 (Executive Conference Room)

Committee Members:

Alex Bardas, Chair
Drew Davidson
Fengjun Li
Bo Luo
ZJ Wang

Abstract

Scanning hosts on the internet for vulnerable devices and services is a key step in numerous cyberattacks. Previous work has shown that scanning is a widespread phenomenon on the internet and commonly targets web application/server deployments. Given that automated scanning is a crucial step in many cyberattacks, it would be beneficial to make it more difficult for adversaries to perform such activity.

In this work, we propose Web-Armour, a mitigation approach to adversarial reconnaissance and vulnerability scanning of web deployments. The proposed approach relies on injecting scanning impeding delays to infrequently or rarely used portions of a web deployment. Web-Armour has two goals: First, increase the cost for attackers to perform automated reconnaissance and vulnerability scanning; Second, introduce minimal to negligible performance overhead to benign users of the deployment. We evaluate Web-Armour on live environments, operated by real users, and on different controlled (offline) scenarios. We show that Web-Armour can effectively lead to thwarting reconnaissance and internet-wide scanning.


Past Defense Notices

Dates

Kaidong Li

Accurate and Robust Object Detection and Classification Based on Deep Neural Networks

When & Where:


Nichols Hall, Room 246 (Executive Conference Room)

Committee Members:

Cuncong Zhong, Chair
Taejoon Kim
Fengjun Li
Bo Luo
Haiyang Chao

Abstract

Recent years have seen tremendous developments in the field of computer vision and its extensive applications. The fundamental task, image classification, benefiting from deep convolutional neural networks (CNN)'s extraordinary ability to extract deep semantic information from input data, has become the backbone for many other computer vision tasks, like object detection and segmentation. A modern detection usually has bounding-box regression and class prediction with a pre-trained classification model as the backbone. The architecture is proven to produce good results, however, improvements can be made with closer inspections. A detector takes a pre-trained CNN from the classification task and selects the final bounding boxes from multiple proposed regional candidates by a process called non-maximum suppression (NMS), which picks the best candidates by ranking their classification confidence scores. The localization evaluation is absent in the entire process. Another issue is the classification uses one-hot encoding to label the ground truth, resulting in an equal penalty for misclassifications between any two classes without considering the inherent relations between the classes. Ultimately, the realms of 2D image classification and 3D point cloud classification represent distinct avenues of research, each relying on significantly different architectures. Given the unique characteristics of these data types, it is not feasible to employ models interchangeably between them.

My research aims to address the following issues. (1) We proposed the first location-aware detection framework for single-shot detectors that can be integrated into any single-shot detectors. It boosts detection performance by calibrating the ranking process in NMS with localization scores. (2) To more effectively back-propagate gradients, we designed a super-class guided architecture that consists of a superclass branch (SCB) and a finer class branch (FCB). To further increase the effectiveness, the features from SCB with high-level information are fed to FCB to guide finer class predictions. (3) Recent works have shown 3D point cloud models are extremely vulnerable under adversarial attacks, which poses a serious threat to many critical applications like autonomous driving and robotic controls. To gap the domain difference in 3D and 2D classification and to increase the robustness of CNN models on 3D point cloud models, we propose a family of robust structured declarative classifiers for point cloud classification. We experimented with various 3D-to-2D mapping algorithm, bridging the gap between 2D and 3D classification. Furthermore, we empirically validate the internal constrained optimization mechanism effectively defend adversarial attacks through implicit gradients.


Andrew Mertz

Multiple Input Single Output (MISO) Receive Processing Techniques for Linear Frequency Modulated Continuous Wave Frequency Diverse Array (LFMCW-FDA) Transmit Structures

When & Where:


Nichols Hall, Room 250 (Gemini Room)

Committee Members:

Patrick McCormick, Chair
Chris Allen
Shannon Blunt
James Stiles

Abstract

This thesis focuses on the multiple processing techniques that can be applied to a single receive element co-located with a Frequency Diverse Array (FDA) transmission structure that illuminates a large volume to estimate the scattering characteristics of objects within the illuminated space in the range, Doppler, and spatial dimensions. FDA transmissions consist of a number of evenly spaced transmitting elements all of which are radiating a linear frequency modulated (LFM) waveform. The elements are configured into a Uniform Linear Array (ULA) and the waveform of each element is separated by a frequency spacing across the elements where the time duration of the chirp is inversely proportional to an integer multiple of the frequency spacing between elements. The complex transmission structure created by this arrangement of multiple transmitting elements can be received and processed by a single receive element. Furthermore, multiple receive processing techniques, each with their own advantages and disadvantages, can be applied to the data received from the single receive element to estimate the range, velocity, and spatial direction of targets in the illuminated volume relative to the co-located transmit array and receive element. Three different receive processing techniques that can be applied to FDA transmissions are explored. Two of these techniques are novel to this thesis, including the spatial matched filter processing technique for FDA transmission structures, and stretch processing using virtual array processing for FDA transmissions. Additionally, this thesis introduces a new type of FDA transmission structure referred to as ”slow-time” FDA.


Ragib Shakil Rafi

Nonlinearity Assisted Mie Scattering from Nanoparticles

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Alessandro Salandrino , Chair
Shima Fardad
Morteza Hashemi
Rongqing Hui
Judy Z Wu

Abstract

Scattering by nanoparticles is an exciting branch of physics to control and manipulate light. More specifically, there have been fascinating developments regarding light scattering by sub-wavelength particles, including high-index dielectric and metal particles for their applications in optical resonance phenomena, detecting the fluorescence of molecules, enhancing Raman scattering, transferring the energy to the higher order modes, sensing, and photodetector technologies. This research area has recently gained renewed attention with the study of near-field effects at the nanoscale in advanced regimes of operation, including nonlinear effects and the time-varying parametric modulation of local material properties. When the particle size is comparable to or slightly bigger than the incident wavelength, Mie solutions to Maxwell's equations describe these electromagnetic scattering problems. The addition and excitation of nonlinear effects in these high-indexed sub-wavelength dielectric and plasmonic particles holds promise to improve the existing performance of the system or provide additional features directed toward novel applications. This dissertation explores Mie scattering from dielectric and plasmonic particles in the presence of nonlinear effects, more specifically second and third order nonlinear effects. For numerical analysis, an in-house Rigorous Coupled Analysis (RCWA) method has been developed in a Matlab environment and validated based on designing metasurfaces and comparing them with established results. For dielectrics, this dissertation presents a numerical study of the linear and nonlinear diffraction and focusing properties of dielectric metasurfaces consisting of silicon microcylinder arrays resting on a silicon substrate. Upon diffraction, such structures lead to the formation of near-field intensity profiles reminiscent of photonic nanojets and propagate similarly. The results indicate that the Kerr nonlinear effect i.e. third order nonlinear effect enhances light concentration throughout the generated photonic jet with an increase in the intensity of about 20% compared to the linear regime for the power levels considered in this work. The transverse beamwidth remains subwavelength in all cases, and the nonlinear effect reduces the full width. On the other hand, plasmonic structures give rise to localized surface plasmons and excitations of the conduction electrons within metallic nanostructures. These aren't propagating but instead confined to the vicinity of the nanostructure, interacting with the electromagnetic field. These modes emerge from the scattering between small conductive nanoparticles with an oscillating electromagnetic field. This dissertation introduces a novel mechanism to transfer energy from excited dipolar mode to such higher-order subradiant localized mode. Recent advancements in time-varying structures that help relax photon energy conservation constraints and a newly proposed plasmonic parametric resonance pave the way for this work. With the help of the second-order nonlinear wave mixing process and parametric modulation of the dielectric permittivity in a medium surrounding metal particles, we have introduced a way to accomplish the otherwise nearly impossible task to selectively couple energy into specific high order modes of a nanostructures. This work further shows that the oscillating mode amplitude reaches a steady state, and the steady state establishes the ideal modulation conditions that enhance the amplitude of the high-order mode.


Ben Liu

Computational Microbiome Analysis: Method Development, Integration and Clinical Applications

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Cuncong Zhong, Chair
Esam El-Araby
Bo Luo
Zijun Yao
Mizuki Azuma

Abstract

Metagenomics is the study of microbial genomes from one common environment. Metagenomic data is directly derived from all microorganisms present in the environmental samples, in- including those inaccessible through conventional methods like laboratory cultures. Thus it offers an unbiased view of microbial communities, enabling researchers to explore not only the taxonomic composition (identifying which microorganisms are present) but also the community’s metabolic functions.

The metagenomic data consists of a huge number of fragmented DNA sequences from diverse microorganisms with different abundance. These characteristics pose challenges to analysis and impede practical applications. Firstly, the development of an efficient detection tool for a specific target from metagenomic data is confronted by the challenge of daunting data size. Secondly, the accuracy of the detection tool is also challenged by the incompleteness of metagenomic data. Thirdly, numerous analysis tools are designed for individual detection targets, and many detection targets are contained within the data, there is a need for comprehensive and scalable integration of existing resources.

In this dissertation, we conducted the computational microbiome analysis at different levels: (1) We first developed an assembly graph-based ncRNA searching tool, named DRAGoM, to im- improve the detection quality in metagenomic data. (2) We then developed an automatic detection model, named SNAIL, to automatically detect names of bioinformatic resources from biomedical literature for comprehensive and scalable organizing resources. We also developed a method to automatically annotate sentences for training SNAIL, which not only benefits the performance of SNAIL but also allows it to be trained on both manual and machine-annotated data, thus minimizing the need for extensive manual data labeling efforts. (3) We applied different analyzing tools to metagenomic datasets from a series of clinical studies and developed models to predict therapeutic benefits from immunotherapy in non-small-cell lung cancer patients using human gut microbiome signatures.


Amin Shojaei

Exploring Cooperative and Robust Multi-Agent Reinforcement Learning in Networked Cyber-Physical Systems: Applications in Smart Grids

When & Where:


Nichols Hall, Room 246 (Executive Conference Room)

Committee Members:

Morteza Hashemi, Chair
Alex Bardas
Taejoon Kim
Prasad Kulkarni
Shawn Keshmiri

Abstract

Significant advances in information and networking technologies have transformed Cyber-Physical Systems (CPS) into networked cyber-physical systems (NCPS). A noteworthy example of such systems is smart grid networks, which include distributed energy resources (DERs), renewable generation, and the widespread adoption of Electric Vehicle (EV). Such complex NCPS require intelligent and autonomous control solutions. For example, the increasing number of EVs introduces significant sources of demand and user behavior uncertainty that can jeopardize the grid stability during peak hours. Traditional model-based demand-supply controls fail to accurately model and capture the complex nature of smart grid systems in the presence of different uncertainties and as the system size grows. To address these challenges, data-driven approaches have emerged as an effective solution for informed decision-making, predictive modeling, and adaptive control to enhance the resiliency of NCPS in uncertain environments.

As a powerful data-driven approach, Multi-Agent Reinforcement Learning (MARL) enables agents to learn and adapt in dynamic and uncertain environments. However, MARL techniques introduce complexities related to communication, coordination, and synchronization among agents. In this PhD research, we investigate autonomous control for smart grid decision networks using MARL. Within this context, first, we examine the issue of imperfect state information, which frequently arises due to the inherent uncertainties and limitations in observing the system state. Secondly, we investigate the challenges associated with distributed MARL techniques, with a special focus on the central training distributed execution (CTDE) methods. Throughout this research, we highlight the significance of cooperation in MARL for achieving autonomous control in smart grid systems and other cyber-physical domains. Thirdly, we propose a novel robust MARL framework using a hierarchical structure. We perform an extensive analysis and evaluation of our proposed hierarchical MARL model for large-scale EV networks, thereby addressing the scalability and robustness challenges as the number of agents within a NCPS increases.


Ahmet Soyyigit

Anytime Computing Techniques for Lidar-Based Perception in Cyber-Physical Systems

When & Where:


Nichols Hall, Room 317 (Richard K. Moore Conference Room)

Committee Members:

Heechul Yun, Chair
Michael Branicky
Prasad Kulkarni
Hongyang Sun
Shawn Keshmiri

Abstract

The pursuit of autonomy in cyber-physical systems (CPS) presents a challenging task of real-time interaction with the physical world, prompting extensive research in this domain. Recent advancements in artificial intelligence (AI), particularly the introduction of deep neural networks (DNNs), have significantly enhanced CPS autonomy, notably boosting perception capabilities. 

CPS perception aims to discern, classify, and track the objects of interest in the operational environment, a task considerably challenging for computers in three-dimensional (3D) space. For this task of detecting objects, leveraging lidar sensors and processing their readings with deep neural networks (DNN) has become popular due to their excellent performance. 

However, in systems like self-driving cars and drones, object detection must be both accurate and timely, posing a challenge due to the high computational demand of lidar object detection DNNs. Furthermore, lidar object detection DNNs lack the capability to dynamically reduce their execution time by compromising accuracy (i.e. anytime computing). This adaptability is crucial since deadline constraints can change based on the operational environment and the internal status of the system.  

Prior research aimed at anytime computing for object detection DNNs using camera images are not applicable when considered to lidar-based detection due to architectural differences. Addressing this challenge, this thesis focuses on proposing novel techniques, such as Anytime-Lidar and VALO (Versatile Anytime Lidar Object Detection). These innovations aim to enable lidar-based object detection DNNs to make effective tradeoffs between latency and accuracy. Finally, the thesis aims to integrate the proposed anytime object detection techniques into unmanned aerial vehicles and introduce a system-level scheduler capable of managing multiple anytime computation capable tasks.  


Andrew Mertz

Multiple Input Single Output (MISO) Receive Processing Techniques for Linear Frequency Modulated Continuous Wave Frequency Diverse Array (LFMCW-FDA) Transmit Structures

When & Where:


Nichols Hall, Room 246 (Executive Conference Room)

Committee Members:

Patrick McCormick, Chair
Chris Allen
Shannon Blunt
James Stiles

Abstract

This thesis focuses on the multiple processing techniques that can be applied to a single receive element co-located with a Frequency Diverse Array (FDA) transmission structure that illuminates a large volume to estimate the scattering characteristics of objects within the illuminated space in the range, Doppler, and spatial dimensions. FDA transmissions consist of a number of evenly spaced transmitting elements all of which are radiating a linear frequency modulated (LFM) waveform. The elements are configured into a Uniform Linear Array (ULA) and the waveform of each element is separated by a frequency spacing across the elements where the time duration of the chirp is inversely proportional to an integer multiple of the frequency spacing between elements. The complex transmission structure created by this arrangement of multiple transmitting elements can be received and processed by a single receive element. Furthermore, multiple receive processing techniques, each with their own advantages and disadvantages, can be applied to the data received from the single receive element to estimate the range, velocity, and spatial direction of targets in the illuminated volume relative to the co-located transmit array and receive element. Three different receive processing techniques that can be applied to FDA transmissions are explored. Two of these techniques are novel to this thesis, including the spatial matched filter processing technique for FDA transmission structures, and stretch processing using virtual array processing for FDA transmissions. Additionally, this thesis introduces a new type of FDA transmission structure referred to as ”slow-time” FDA.


Sameera Katamaneni

Revolutionizing Forensic Identification: A Dual-Method Facial Recognition Paradigm for Enhanced Criminal Identification

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Prasad Kulkarni, Chair
Hongyang Sun



Abstract

In response to the challenges posed by increasingly sophisticated criminal behaviour that strategically evades conventional identification methods, this research advocates for a paradigm shift in forensic practices. Departing from reliance on traditional biometric techniques such as DNA matching, eyewitness accounts, and fingerprint analysis, the study introduces a pioneering biometric approach centered on facial recognition systems. Addressing the limitations of established methods, the proposed methodology integrates two key components. Firstly, facial features are meticulously extracted using the Histogram of Oriented Gradients (HOG) methodology, providing a robust representation of individualized facial characteristics. Subsequently, a face recognition system is implemented, harnessing the power of the K-Nearest Neighbours machine learning classifier. This innovative dual-method approach aims to significantly enhance the accuracy and reliability of criminal identification, particularly in scenarios where conventional methods prove inadequate. By capitalizing on the inherent uniqueness of facial features, this research strives to introduce a formidable tool for forensic practitioners, offering a more effective means of addressing the evolving landscape of criminal tactics and safeguarding the integrity of justice systems. 


Thomas Atkins

Secure and Auditable Academic Collections Storage via Hyperledger Fabric-Based Smart Contracts

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Drew Davidson, Chair
Fengjun Li
Bo Luo


Abstract

This paper introduces a novel approach to manage collections of artifacts through smart contract access control, rooted in on-chain role-based property-level access control. This smart contract facilitates the lifecycle of these artifacts including allowing for the creation,  modification, removal, and historical auditing of the artifacts through both direct and suggested actions. This method introduces a collection object designed to store role privileges concerning state object properties. User roles are defined within an on-chain entity that maps users' signed identities to roles across different collections, enabling a single user to assume varying roles in distinct collections. Unlike existing key-level endorsement mechanisms, this approach offers finer-grained privileges by defining them on a per-property basis, not at the key level. The outcome is a more flexible and fine-grained access control system seamlessly integrated into the smart contract itself, empowering administrators to manage access with precision and adaptability across diverse organizational contexts.  This has the added benefit of allowing for the auditing of not only the history of the artifacts, but also for the permissions granted to the users.  


Christian Jones

Robust and Efficient Structure-Based Radar Receive Processing

When & Where:


Nichols Hall, Room 129 (Apollo Auditorium)

Committee Members:

Shannon Blunt, Chair
Chris Allen
Suzanne Shontz
James Stiles
Zsolt Talata

Abstract

Legacy radar systems largely rely on repeated emission of a linear frequency modulated (LFM) or chirp waveform to ascertain scattering information from an environment. The prevalence of these chirp waveforms largely stems from their simplicity to generate, process, and the general robustness they provide towards hardware effects. However, this traditional design philosophy often lacks the flexibility and dimensionality needed to address the dynamic “complexification” of the modern radio frequency (RF) environment or achieve current operational requirements where unprecedented degrees of sensitivity, maneuverability, and adaptability are necessary.

Over the last couple of decades analog-to-digital and digital-to-analog technologies have advanced exponentially, resulting in tremendous design degrees of freedom and arbitrary waveform generation (AWG) capabilities that enable sophisticated design of emissions to better suit operational requirements. However, radar systems typically require high powered amplifiers (HPA) to contend with the two-way propagation. Thus, transmitter-amenable waveforms are effectively constrained to be both spectrally contained and constant amplitude, resulting in a non-convex NP-hard design problem.

While determining the global optimal waveform can be intractable for even modest time-bandwidth products (TB), locally optimal transmitter-amenable solutions that are “good enough” are often readily available. However, traditional matched filtering may not satisfy operational requirements for these sub-optimal emissions. Using knowledge of the transmitter-receiver chain, a discrete linear model can be formed to express the relationship between observed measurements and the complex scattering of the environment. This structured representation then enables more sophisticated least-square and adaptive estimation techniques to better satisfy operational needs, improve estimate fidelity, and extend dynamic range.

However, radar dimensionality can be enormous and brute force implementations of these techniques may have unwieldy computational burden on even cutting-edge hardware. Additionally, a discrete linear representation is fundamentally an approximation of the dynamic continuous physical reality and model errors may induce bias, create false detections, and limit dynamic range. As such, these structure-based approaches must be both computationally efficient and robust to reality.

Here several generalized discrete radar receive models and structure-based estimation schemes are introduced. Modifications and alternative solutions are then proposed to improve estimate fidelity, reduce computational complexity, and provide further robustness to model uncertainty.