Defense Notices


All students and faculty are welcome to attend the final defense of EECS graduate students completing their M.S. or Ph.D. degrees. Defense notices for M.S./Ph.D. presentations for this year and several previous years are listed below in reverse chronological order.

Students who are nearing the completion of their M.S./Ph.D. research should schedule their final defenses through the EECS graduate office at least THREE WEEKS PRIOR to their presentation date so that there is time to complete the degree requirements check, and post the presentation announcement online.

Upcoming Defense Notices

Masoud Ghazikor

Distributed Optimization and Control Algorithms for UAV Networks in Unlicensed Spectrum Bands

When & Where:


Nichols Hall, Room 246 (Executive Conference Room)

Committee Members:

Morteza Hashemi, Chair
Victor Frost
Prasad Kulkarni


Abstract

UAVs have emerged as a transformative technology for various applications, including emergency services, delivery, and video streaming. Among these, video streaming services in areas with limited physical infrastructure, such as disaster-affected areas, play a crucial role in public safety. UAVs can be rapidly deployed in search and rescue operations to efficiently cover large areas and provide live video feeds, enabling quick decision-making and resource allocation strategies. However, ensuring reliable and robust UAV communication in such scenarios is challenging, particularly in unlicensed spectrum bands, where interference from other nodes is a significant concern. To address this issue, developing a distributed transmission control and video streaming is essential to maintaining a high quality of service, especially for UAV networks that rely on delay-sensitive data.

In this MSc thesis, we study the problem of distributed transmission control and video streaming optimization for UAVs operating in unlicensed spectrum bands. We develop a cross-layer framework that jointly considers three inter-dependent factors: (i) in-band interference introduced by ground-aerial nodes at the physical layer, (ii) limited-size queues with delay-constrained packet arrival at the MAC layer, and (iii) video encoding rate at the application layer. This framework is designed to optimize the average throughput and PSNR by adjusting fading thresholds and video encoding rates for an integrated aerial-ground network in unlicensed spectrum bands. Using consensus-based distributed algorithm and coordinate descent optimization, we develop two algorithms: (i) Distributed Transmission Control (DTC) that dynamically adjusts fading thresholds to maximize the average throughput by mitigating trade-offs between low-SINR transmission errors and queue packet losses, and (ii) Joint Distributed Video Transmission and Encoder Control (JDVT-EC) that optimally balances packet loss probabilities and video distortions by jointly adjusting fading thresholds and video encoding rates. Through extensive numerical analysis, we demonstrate the efficacy of the proposed algorithms under various scenarios.


Ganesh Nurukurti

Customer Behavior Analytics and Recommendation System for E-Commerce

When & Where:


Eaton Hall, Room 2001B

Committee Members:

David Johnson, Chair
Prasad Kulkarni
Han Wang


Abstract

In the era of digital commerce, personalized recommendations are pivotal for enhancing user experience and boosting engagement. This project presents a comprehensive recommendation system integrated into an e-commerce web application, designed using Flask and powered by collaborative filtering via Singular Value Decomposition (SVD). The system intelligently predicts and personalizes product suggestions for users based on implicit feedback such as purchases, cart additions, and search behavior.

 

The foundation of the recommendation engine is built on user-item interaction data, derived from the Brazilian e-commerce Olist dataset. Ratings are simulated using weighted scores for purchases and cart additions, reflecting varying degrees of user intent. These interactions are transformed into a user-product matrix and decomposed using SVD, yielding latent user and product features. The model leverages these latent factors to predict user interest in unseen products, enabling precise and scalable recommendation generation.

 

To further enhance personalization, the system incorporates real-time user activity. Recent search history is stored in an SQLite database and used to prioritize recommendations that align with the user’s current interests. A diversity constraint is also applied to avoid redundancy, limiting the number of recommended products per category.

 

The web application supports robust user authentication, product exploration by category, cart management, and checkout simulations. It features a visually driven interface with dynamic visualizations for product insights and user interactions. The home page adapts to individual preferences, showing tailored product recommendations and enabling users to explore categories and details.

 

In summary, this project demonstrates the practical implementation of a hybrid recommendation strategy combining matrix factorization with contextual user behavior. It showcases the importance of latent factor modeling, data preprocessing, and user-centric design in delivering an intelligent retail experience.


Srijanya Chetikaneni

Plant Disease Prediction Using Transfer Learning

When & Where:


Eaton Hall, Room 2001B

Committee Members:

David Johnson, Chair
Prasad Kulkarni
Han Wang


Abstract

Timely detection of plant diseases is critical to safeguarding crop yields and ensuring global food security. This project presents a deep learning-based image classification system to identify plant diseases using the publicly available PlantVillage dataset. The core objective was to evaluate and compare the performance of a custom-built Convolutional Neural Network (CNN) with two widely used transfer learning models—EfficientNetB0 and MobileNetV3Small. 

All models were trained on augmented image data resized to 224×224 pixels, with preprocessing tailored to each architecture. The custom CNN used simple normalization, whereas EfficientNetB0 and MobileNetV3Small utilized their respective pre-processing methods to standardize the pretrained ImageNet domain inputs. To improve robustness, the training pipeline included data augmentation, class weighting, and early stopping.

Training was conducted using the Adam optimizer and categorical cross-entropy loss over 30 epochs, with performance assessed using accuracy, loss, and training time metrics. The results revealed that transfer learning models significantly outperformed the custom CNN. EfficientNetB0 achieved the highest accuracy, making it ideal for high-precision applications, while MobileNetV3Small offered a favorable balance between speed and accuracy, making it suitable for lightweight, real-time inference on edge devices.

This study validates the effectiveness of transfer learning for plant disease detection tasks and emphasizes the importance of model-specific preprocessing and training strategies. It provides a foundation for deploying intelligent plant health monitoring systems in practical agricultural environments.


Ahmet Soyyigit

Anytime Computing Techniques for LiDAR-based Perception In Cyber-Physical Systems

When & Where:


Nichols Hall, Room 250 (Gemini Room)

Committee Members:

Heechul Yun, Chair
Michael Branicky
Prasad Kulkarni
Hongyang Sun
Shawn Keshmiri

Abstract

The pursuit of autonomy in cyber-physical systems (CPS) presents a challenging task of real-time interaction with the physical world, prompting extensive research in this domain. Recent advances in artificial intelligence (AI), particularly the introduction of deep neural networks (DNN), have significantly improved the autonomy of CPS, notably by boosting perception capabilities.

CPS perception aims to discern, classify, and track objects of interest in the operational environment, a task that is considerably challenging for computers in a three-dimensional (3D) space. For this task, the use of LiDAR sensors and processing their readings with DNNs has become popular because of their excellent performance However, in CPS such as self-driving cars and drones, object detection must be not only accurate but also timely, posing a challenge due to the high computational demand of LiDAR object detection DNNs. Satisfying this demand is particularly challenging for on-board computational platforms due to size, weight, and power constraints. Therefore, a trade-off between accuracy and latency must be made to ensure that both requirements are satisfied. Importantly, the required trade-off is operational environment dependent and should be weighted more on accuracy or latency dynamically at runtime. However, LiDAR object detection DNNs cannot dynamically reduce their execution time by compromising accuracy (i.e. anytime computing). Prior research aimed at anytime computing for object detection DNNs using camera images is not applicable to LiDAR-based detection due to architectural differences. This thesis addresses these challenges by proposing three novel techniques: Anytime-LiDAR, which enables early termination with reasonable accuracy; VALO (Versatile Anytime LiDAR Object Detection), which implements deadline-aware input data scheduling; and MURAL (Multi-Resolution Anytime Framework for LiDAR Object Detection), which introduces dynamic resolution scaling. Together, these innovations enable LiDAR-based object detection DNNs to make effective trade-offs between latency and accuracy under varying operational conditions, advancing the practical deployment of LiDAR object detection DNNs.


Rahul Purswani

Finetuning Llama on custom data for QA tasks

When & Where:


Eaton Hall, Room 2001B

Committee Members:

David Johnson, Chair
Drew Davidson
Prasad Kulkarni


Abstract

Fine-tuning large language models (LLMs) for domain-specific use cases, such as question answering, offers valuable insights into how their performance can be tailored to specialized information needs. In this project, we focused on the University of Kansas (KU) as our target domain. We began by scraping structured and unstructured content from official KU webpages, covering a wide array of student-facing topics including campus resources, academic policies, and support services. From this content, we generated a diverse set of question-answer pairs to form a high-quality training dataset. LLaMA 3.2 was then fine-tuned on this dataset to improve its ability to answer KU-specific queries with greater relevance and accuracy. Our evaluation revealed mixed results—while the fine-tuned model outperformed the base model on most domain-specific questions, the original model still had an edge in handling ambiguous or out-of-scope prompts. These findings highlight the strengths and limitations of domain-specific fine-tuning, and provide practical takeaways for customizing LLMs for real-world QA applications.


Rithvij Pasupuleti

A Machine Learning Framework for Identifying Bioinformatics Tools and Database Names in Scientific Literature

When & Where:


LEEP2, Room 2133

Committee Members:

Cuncong Zhong, Chair
Dongjie Wang
Han Wang
Zijun Yao

Abstract

The absence of a single, comprehensive database or repository cataloging all bioinformatics databases and software creates a significant barrier for researchers aiming to construct computational workflows. These workflows, which often integrate 10–15 specialized tools for tasks such as sequence alignment, variant calling, functional annotation, and data visualization, require researchers to explore diverse scientific literature to identify relevant resources. This process demands substantial expertise to evaluate the suitability of each tool for specific biological analyses, alongside considerable time to understand their applicability, compatibility, and implementation within a cohesive pipeline. The lack of a central, updated source leads to inefficiencies and the risk of using outdated tools, which can affect research quality and reproducibility. Consequently, there is a critical need for an automated, accurate tool to identify bioinformatics databases and software mentions directly from scientific texts, streamlining workflow development and enhancing research productivity. 

 

The bioNerDS system, a prior effort to address this challenge, uses a rule-based named entity recognition (NER) approach, achieving an F1 score of 63% on an evaluation set of 25 articles from BMC Bioinformatics and PLoS Computational Biology. By integrating the same set of features such as context patterns, word characteristics and dictionary matches into a machine learning model, we developed an approach using an XGBoost classifier. This model, carefully tuned to address the extreme class imbalance inherent in NER tasks through synthetic oversampling and refined via systematic hyperparameter optimization to balance precision and recall, excels at capturing complex linguistic patterns and non-linear relationships, ensuring robust generalization. It achieves an F1 score of 82% on the same evaluation set, significantly surpassing the baseline. By combining rule-based precision with machine learning adaptability, this approach enhances accuracy, reduces ambiguities, and provides a robust tool for large-scale bioinformatics resource identification, facilitating efficient workflow construction. Furthermore, this methodology holds potential for extension to other technological domains, enabling similar resource identification in fields like data science, artificial intelligence, or computational engineering.


Vishnu Chowdary Madhavarapu

Automated Weather Classification Using Transfer Learning

When & Where:


Nichols Hall, Room 250 (Gemini Room)

Committee Members:

David Johnson, Chair
Prasad Kulkarni
Dongjie Wang


Abstract

This project presents an automated weather classification system utilizing transfer learning with pre-trained convolutional neural networks (CNNs) such as VGG19, InceptionV3, and ResNet50. Designed to classify weather conditions—sunny, cloudy, rainy, and sunrise—from images, the system addresses the challenge of limited labeled data by applying data augmentation techniques like zoom, shear, and flip, expanding the dataset images. By fine-tuning the final layers of pre-trained models, the solution achieves high accuracy while significantly reducing training time. VGG19 was selected as the baseline model for its simplicity, strong feature extraction capabilities, and widespread applicability in transfer learning scenarios. The system was trained using the Adam optimizer and evaluated on key performance metrics including accuracy, precision, recall, and F1 score. To enhance user accessibility, a Flask-based web interface was developed, allowing real-time image uploads and instant weather classification. The results demonstrate that transfer learning, combined with robust data preprocessing and fine-tuning, can produce a lightweight and accurate weather classification tool. This project contributes toward scalable, real-time weather recognition systems that can integrate into IoT applications, smart agriculture, and environmental monitoring.


RokunuzJahan Rudro

Using Machine Learning to Classify Driver Behavior from Psychological Features: An Exploratory Study

When & Where:


Eaton Hall, Room 1A

Committee Members:

Sumaiya Shomaji, Chair
David Johnson
Zijun Yao
Alexandra Kondyli

Abstract

Driver inattention and human error are the primary causes of traffic crashes. However, little is known about the relationship between driver aggressiveness and safety. Although several studies that group drivers into different classes based on their driving performance have been conducted, little has been done to explore how behavioral traits are linked to driver behavior. The study aims to link different driver profiles, assessed through psychological evaluations, with their likelihood of engaging in risky driving behaviors, as measured in a driving simulation experiment. By incorporating psychological factors into machine learning algorithms, our models were able to successfully relate self-reported decision-making and personality characteristics with actual driving actions. Our results hold promise toward refining existing models of driver behavior  by understanding the psychological and behavioral characteristics that influence the risk of crashes.


Md Mashfiq Rizvee

Energy Optimization in Multitask Neural Networks through Layer Sharing

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Sumaiya Shomaji, Chair
Tamzidul Hoque
Han Wang


Abstract

Artificial Intelligence (AI) is being widely used in diverse domains such as industrial automation, traffic control, precision agriculture, and smart cities for major heavy lifting in terms of data analysis and decision making. However, the AI life- cycle is a major source of greenhouse gas (GHG) emission leading to devastating environmental impact. This is due to expensive neural architecture searches, training of countless number of models per day across the world, in-field AI processing of data in billions of edge devices, and advanced security measures across the AI life cycle. Modern applications often involve multitasking, which involves performing a variety of analyzes on the same dataset. These tasks are usually executed on resource-limited edge devices, necessitating AI models that exhibit efficiency across various measures such as power consumption, frame rate, and model size. To address these challenges, we introduce a novel neural network architecture model that incorporates a layer sharing principle to optimize the power usage. We propose a novel neural architecture, Layer Shared Neural Networks that merges multiple similar AI/NN tasks together (with shared layers) towards creating a single AI/NN model with reduced energy requirements and carbon footprint. The experimental findings reveal competitive accuracy and reduced power consumption. The layer shared model significantly reduces power consumption by 50% during training and 59.10% during inference causing as much as an 84.64% and 87.10% decrease in CO2 emissions respectively. 

  


Fairuz Shadmani Shishir

Parameter-Efficient Computational Drug Discovery using Deep Learning

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Sumaiya Shomaji, Chair
Tamzidul Hoque
Hongyang Sun


Abstract

The accurate prediction of small molecule binding affinity and toxicity remains a central challenge in drug discovery, with significant implications for reducing development costs, improving candidate prioritization, and enhancing safety profiles. Traditional computational approaches, such as molecular docking and quantitative structure-activity relationship (QSAR) models, often rely on handcrafted features and require extensive domain knowledge, which can limit scalability and generalization to novel chemical scaffolds. Recent advances in language models (LMs), particularly those adapted to chemical representations such as SMILES (Simplified Molecular Input Line Entry System), have opened new ways for learning data-driven molecular representations that capture complex structural and functional properties. However, achieving both high binding affinity and low toxicity through a resource-efficient computational pipeline is inherently difficult due to the multi-objective nature of the task. This study presents a novel dual-paradigm approach to critical challenges in drug discovery: predicting small molecules with high binding affinity and low cardiotoxicity profiles. For binding affinity prediction, we implement a specialized graph neural network (GNN) architecture that operates directly on molecular structures represented as graphs, where atoms serve as nodes and bonds as edges. This topology-aware approach enables the model to capture complex spatial arrangements and electronic interactions critical for protein-ligand binding. For toxicity prediction, we leverage chemical language models (CLMs) fine-tuned with Low-Rank Adaptation (LoRA), allowing efficient adaptation of large pre-trained models to specialized toxicological endpoints while maintaining the generalized chemical knowledge embedded in the base model. Our hybrid methodology demonstrates significant improvements over existing computational approaches, with the GNN component achieving an average area under the ROC curve (AUROC) of 0.92 on three protein targets and the LoRA-adapted CLM reaching (AUROC) of 0.90 with 60% reduction in parameter usage in predicting cardiotoxicity. This work establishes a powerful computational framework that accelerates drug discovery by enabling both higher binding affinity and low toxicity compounds with optimized efficacy and safety profiles. 


Soma Pal

Truths about compiler optimization for state-of-the-art (SOTA) C/C++ compilers

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Prasad Kulkarni, Chair
Esam El-Araby
Drew Davidson
Tamzidul Hoque
Jiang Yunfeng

Abstract

Compiler optimizations are critical for performance and have been extensively studied, especially for C/C++ language compilers. Our overall goal in this thesis is to investigate and compare the properties and behavior of optimization passes across multiple contemporary, state-of-the-art (SOTA)  C/C++ compilers to understand if they adopt similar optimization implementation and orchestration strategies. Given the maturity of pre-existing knowledge in the field, it seems conceivable that different compiler teams will adopt consistent optimization passes, pipeline and application techniques. However, our preliminary results indicate that such expectation may be misguided. If so, then we will attempt to understand the differences, and study and quantify their impact on the performance of generated code.

In our first work, we study and compare the behavior of profile-guided optimizations (PGO) in two popular SOTA C/C++ compilers, GCC and Clang. This study reveals many interesting, and several counter-intuitive, properties about PGOs in C/C++ compilers. The behavior and benefits of PGOs also vary significantly across our selected compilers. We present our observations, along with plans to further explore these inconsistencies in this report. Likewise, we have also measured noticeable differences in the performance delivered by optimizations across our compilers. We propose to explore and understand these differences in this work. We present further details regarding our proposed directions and planned experiments in this report. We hope that this work will show and suggest opportunities for compilers to learn from each other and motivate researchers to find mechanisms to combine the benefits of multiple compilers to deliver higher overall program performance.


Nyamtulla Shaik

AI Vision to Care: A QuadView of Deep Learning for Detecting Harmful Stimming in Autism

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Sumaiya Shomaji, Chair
Bo Luo
Dongjie Wang


Abstract

Stimming refers to repetitive actions or behaviors used to regulate sensory input or express feelings. Children with developmental disorders like autism (ASD) frequently perform stimming. This includes arm flapping, head banging, finger flicking, spinning, etc. This is exhibited by 80-90% of children with Autism, which is seen in 1 among 36 children in the US. Head banging is one of these self-stimulatory habits that can be harmful. If these behaviors are automatically identified and notified using live video monitoring, parents and other caregivers can better watch over and assist children with ASD.
Classifying these actions is important to recognize harmful stimming, so this study focuses on developing a deep learning-based approach for stimming action recognition. We implemented and evaluated four models leveraging three deep learning architectures based on Convolutional Neural Networks (CNNs), Autoencoders, and Vision Transformers. For the first time in this area, we use skeletal joints extracted from video sequences. Previous works relied solely on raw RGB videos, vulnerable to lighting and environmental changes. This research explores Deep Learning based skeletal action recognition and data processing techniques for a small unstructured dataset that consists of 89 home recorded videos collected from publicly available sources like YouTube. Our robust data cleaning and pre-processing techniques helped the integration of skeletal data in stimming action recognition, which performed better than state-of-the-art with a classification accuracy of up to 87%
In addition to using traditional deep learning models like CNNs for action recognition, this study is among the first to apply data-hungry models like Vision Transformers (ViTs) and Autoencoders for stimming action recognition on the dataset. The results prove that using skeletal data reduces the processing time and significantly improves action recognition, promising a real-time approach for video monitoring applications. This research advances the development of automated systems that can assist caregivers in more efficiently tracking stimming activities.


Alexander Rodolfo Lara

Creating a Faradaic Efficiency Graph Dataset Using Machine Learning

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Zijun Yao, Chair
Sumaiya Shomaji
Kevin Leonard


Abstract

Just as the internet-of-things leverages machine learning over a vast amount of data produced by an innumerable number of sensors, the Internet of Catalysis program uses similar strategies with catalysis research. One application of the Internet of Catalysis strategy is treating research papers as datapoints, rich with text, figures, and tables. Prior research within the program focused on machine learning models applied strictly over text.

This project is the first step of the program in creating a machine learning model from the images of catalysis research papers. Specifically, this project creates a dataset of faradaic efficiency graphs using transfer learning from pretrained models. The project utilizes FasterRCNN_ResNet50_FPN, LayoutLMv3SequenceClassification, and computer vision techniques to recognize figures, extract all graphs, then classify the faradaic efficiency graphs.

Downstream of this project, researchers will create a graph reading model to integrate with large language models. This could potentially lead to a multimodal model capable of fully learning from images, tables, and texts of catalysis research papers. Such a model could then guide experimentation on reaction conditions, catalysts, and production.


Amin Shojaei

Scalable and Cooperative Multi-Agent Reinforcement Learning for Networked Cyber-Physical Systems: Applications in Smart Grids

When & Where:


Nichols Hall, Room 246 (Executive Conference Room)

Committee Members:

Morteza Hashemi, Chair
Alex Bardas
Prasad Kulkarni
Taejoon Kim
Shawn Keshmiri

Abstract

Significant advances in information and networking technologies have transformed Cyber-Physical Systems (CPS) into networked cyber-physical systems (NCPS). A noteworthy example of such systems is smart grid networks, which include distributed energy resources (DERs), renewable generation, and the widespread adoption of Electric Vehicles (EVs). Such complex NCPS require intelligent and autonomous control solutions. For example, the increasing number of EVs introduces significant sources of demand and user behavior uncertainty that can jeopardize grid stability during peak hours. Traditional model-based demand-supply controls fail to accurately model and capture the complex nature of smart grid systems in the presence of different uncertainties and as the system size grows. To address these challenges, data-driven approaches have emerged as an effective solution for informed decision-making, predictive modeling, and adaptive control to enhance the resiliency of NCPS in uncertain environments.

As a powerful data-driven approach, Multi-Agent Reinforcement Learning (MARL) enables agents to learn and adapt in dynamic and uncertain environments. However, MARL techniques introduce complexities related to communication, coordination, and synchronization among agents. In this PhD research, we investigate autonomous control for smart grid decision networks using MARL. First, we examine the issue of imperfect state information, which frequently arises due to the inherent uncertainties and limitations in observing the system state.

Second, we focus on the cooperative behavior of agents in distributed MARL frameworks, particularly under the central training with decentralized execution (CTDE) paradigm. We provide theoretical results and variance analysis for stochastic and deterministic cooperative MARL algorithms, including Multi-Agent Deep Deterministic Policy Gradient (MADDPG), Multi-Agent Proximal Policy Optimization (MAPPO), and Dueling MAPPO. These analyses highlight how coordinated learning can improve system-wide decision-making in uncertain and dynamic environments like EV networks.

Third, we address the scalability challenge in large-scale NCPS by introducing a hierarchical MARL framework based on a cluster-based architecture. This framework organizes agents into coordinated subgroups, improving scalability while preserving local coordination. We conduct a detailed variance analysis of this approach to demonstrate its effectiveness in reducing communication overhead and learning complexity. This analysis establishes a theoretical foundation for scalable and efficient control in large-scale smart grid applications.


Asrith Gudivada

Custom CNN for Object State Classification in Robotic Cooking

When & Where:


Nichols Hall, Room 246 (Executive Conference Room)

Committee Members:

David Johnson, Chair
Prasad Kulkarni
Dongjie Wang


Abstract

This project presents the development of a custom Convolutional Neural Network (CNN) designed to classify object states—such as sliced, diced, or peeled—in robotic cooking environments. Recognizing fine-grained object states is critical for context-aware manipulation yet remains a challenging task due to the visual similarity between states and the limited availability of cooking-specific datasets. To address these challenges, we built a lightweight, non-pretrained CNN trained on a curated dataset of 11 object states. Starting with a baseline architecture, we progressively enhanced the model using data augmentation, optimized dropout, batch normalization, Inception modules, and residual connections. These improvements led to a performance increase from ~45% to ~52% test accuracy. The final model demonstrates improved generalization and training stability, showcasing the effectiveness of combining classical and advanced deep learning techniques. This work contributes toward real-time state recognition for autonomous robotic cooking systems, with implications for assistive technologies in domestic and elder care settings.


Tanvir Hossain

Gamified Learning of Computing Hardware Fundamentals Using FPGA-Based Platform

When & Where:


Nichols Hall, Room 250 (Gemini Room)

Committee Members:

Tamzidul Hoque, Chair
Esam El-Araby
Sumaiya Shomaji


Abstract

The growing dependence on electronic systems in consumer and mission critical domains requires engineers who understand the inner workings of digital hardware. Yet many students bypass hardware electives, viewing them as abstract, mathematics heavy, and less attractive than software courses. Escalating workforce shortages in the semiconductor industry and the recent global chip‑supply crisis highlight the urgent need for graduates who can bridge hardware knowledge gaps across engineering sectors. In this thesis, I have developed FPGA‑based games, embedded in inclusive curricular modules, which can make hardware concepts accessible while fostering interest, self‑efficacy, and positive outcome expectations in hardware engineering. A design‑based research methodology guided three implementation cycles: a pilot with seven diverse high‑school learners, a multiweek residential summer camp with high‑school students, and a fifteen‑week multidisciplinary elective enrolling early undergraduate engineering students. The learning experiences targeted binary arithmetic, combinational and sequential logic, state‑machine design, and hardware‑software co‑design. Learners also moved through the full digital‑design flow, HDL coding, functional simulation, synthesis, place‑and‑route, and on‑board verification. In addition, learners explored timing analysis, register‑transfer‑level abstractions, and simple processor datapaths to connect low‑level circuits with system‑level behavior. Mixed‑method evidence was gathered through pre‑ and post‑content quizzes, validated surveys of self‑efficacy and outcome expectations, focus groups, classroom observations, and gameplay analytics. Paired‑sample statistics showed reliable gains in hardware‑concept mastery, self‑efficacy, and outcome expectations. This work contributes a replicable framework for translating foundational hardware topics into modular, game‑based learning activities, empirical evidence of their effectiveness across secondary and early‑college contexts, and design principles for educators who seek to integrate equitable, hands‑on hardware experiences into existing curricula.


Hara Madhav Talasila

Radiometric Calibration of Radar Depth Sounder Data Products

When & Where:


Nichols Hall, Room 317 (Richard K. Moore Conference Room)

Committee Members:

Carl Leuschen, Chair
Patrick McCormick
James Stiles
Jilu Li
Leigh Stearns

Abstract

Although the Center for Remote Sensing of Ice Sheets (CReSIS) performs several radar calibration steps to produce Operation IceBridge (OIB) radar depth sounder data products, these datasets are not radiometrically calibrated and the swath array processing uses ideal (rather than measured [calibrated]) steering vectors. Any errors in the steering vectors, which describe the response of the radar as a function of arrival angle, will lead to errors in positioning and backscatter that subsequently affect estimates of basal conditions, ice thickness, and radar attenuation. Scientific applications that estimate physical characteristics of surface and subsurface targets from the backscatter are limited with the current data because it is not absolutely calibrated. Moreover, changes in instrument hardware and processing methods for OIB over the last decade affect the quality of inter-seasonal comparisons. Recent methods which interpret basal conditions and calculate radar attenuation using CReSIS OIB 2D radar depth sounder echograms are forced to use relative scattering power, rather than absolute methods.

As an active target calibration is not possible for past field seasons, a method that uses natural targets will be developed. Unsaturated natural target returns from smooth sea-ice leads or lakes are imaged in many datasets and have known scattering responses. The proposed method forms a system of linear equations with the recorded scattering signatures from these known targets, scattering signatures from crossing flight paths, and the radiometric correction terms. A least squares solution to optimize the radiometric correction terms is calculated, which minimizes the error function representing the mismatch in expected and measured scattering. The new correction terms will be used to correct the remaining mission data. The radar depth sounder data from all OIB campaigns can be reprocessed to produce absolutely calibrated echograms for the Arctic and Antarctic. A software simulator will be developed to study calibration errors and verify the calibration software. The software for processing natural targets and crossovers will be made available in CReSIS’s open-source polar radar software toolbox. The OIB data will be reprocessed with new calibration terms, providing to the data user community a complete set of radiometrically calibrated radar echograms for the CReSIS OIB radar depth sounder for the first time.


Christopher Ord

A Hardware-Agnostic Simultaneous Transmit And Receive (STAR) Architecture for the Transmission of Non-Repeating FMCW Waveforms

When & Where:


Nichols Hall, Room 246 (Executive Conference Room)

Committee Members:

Rachel Jarvis, Chair
Shannon Blunt
Patrick McCormick


Abstract

With the increasing congestion of the usable RF spectrum, it is increasingly necessary for communication and radar systems to share the same frequencies without disturbing one another. To accomplish this, research has focused on designing a class of non-repeating radar waveforms that appear as noise at the receiver of uncooperative systems, but the peak power from high-power pulsed systems can still overwhelm nearby in-band systems. Therefore, to minimize peak power while maximizing the total energy on target, radar systems must transition to operating at a 100% duty cycle, which inherently requires Simultaneous Transmit and Receive (STAR) operation.

One inherent difficulty when operating monostatic STAR systems is the direct path coupling interference that can saturate a number of components in the radar’s receive chain, which makes digital processing methods that remove this interference ineffective. This thesis proposes a method to reduce the self-interference between the radar’s transmitter in receiver prior to the receiver’s sensitive components to increase the power that the radar can transmit at. By using a combination of tests that manipulate the timing, phase, and magnitude of a secondary waveform that is injected into the radar just before the receiver, upwards of 35.0 dB of self-interference cancellation is achieved for radar waveforms with bandwidths of up to 100 MHz at both S-band and X-band in both simulation and open-air testing.


Fatima Al-Shaikhli

Optical Fiber Measurements: Leveraging Coherent FMCW Techniques

When & Where:


Nichols Hall, Room 246 (Executive Conference Room)

Committee Members:

Rongqing Hui, Chair
Shannon Blunt
Shima Fardad
Alessandro Salandrino
Judy Wu

Abstract

Recent advancements in optical fiber technology have proven to be invaluable in a variety of fields, extending far beyond high-speed communications. These innovations enable optical fiber sensing, which plays a critical role across diverse applications, from medical diagnostics to infrastructure monitoring and automotive systems. This research focuses on leveraging commercially available coherent optical transceiver systems to develop novel measurement techniques for characterizing optical fiber properties. Specifically, our goal is to leverage a digitally chirped frequency-modulated continuous wave (FMCW) to extract detailed information about optical fiber characteristics, as well as target range. Through this approach, we aim to enable more accurate and fast assessments of fiber performance and integrity, while exploring the potential for utilizing existing optical communication networks to enhance fiber characterization capabilities. This goal is investigated through three distinct projects: (1) fiber type characterization based on intensity-modulated electrostriction response, (2) self-homodyne coherent Light Detection and Ranging (LiDAR) system for target range and velocity detection, and (3) birefringence measurements using a coherent Polarization-sensitive Optical Frequency Domain Reflectometer (OFDR) system.

Electrostriction in an optical fiber is introduced by interaction between the forward propagated optical signal and the acoustic standing waves in the radial direction resonating between the center of the core and the cladding circumference of the fiber. The response of electrostriction is dependent on fiber parameters, especially the mode field radius. We demonstrated a novel technique of identifying fiber types through the measurement of intensity modulation induced electrostriction response. As the spectral envelope of electrostriction induced propagation loss is anti-symmetrical, the signal to noise ratio can be significantly increased by subtracting the measured spectrum from its complex conjugate. We show that if the field distribution of the fiber propagation mode is Gaussian, the envelope of the electrostriction-induced loss spectrum closely follows a Maxwellian distribution whose shape can be specified by a single parameter determined by the mode field radius.         

We also present a self-homodyne FMCW LiDAR system based on a coherent receiver. By using the same linearly chirped waveform for both the LiDAR signal and the local oscillator, the self-homodyne coherent receiver performs frequency de-chirping directly in the photodiodes, significantly simplifying signal processing. As a result, the required receiver bandwidth is much lower than the chirping bandwidth of the signal. Multi-target detection is demonstrated experimentally, and while only amplitude modulation is required in the LiDAR transmitter, the phase-diversity coherent receiver enables simultaneous detection of both range and velocity for each target, along with the sign of the target’s velocity.

In addition, we demonstrate a polarization-sensitive OFDR system utilizing a commercially available digital coherent optical transceiver to generate a linear frequency chirp via carrier-suppressed single-sideband modulation. This method ensures linearity in chirping and phase continuity of the optical carrier. The coherent homodyne receiver, incorporating both polarization and phase diversity, recovers the state of polarization (SOP) of the backscattered optical signal along the fiber, mixing with an identically chirped local oscillator. With a spatial resolution of approximately , a chirping bandwidth, and a measurement time, this system enables precise birefringence measurements. By employing three mutually orthogonal SOPs of the launched optical signal, we can measure birefringence vectors along the fiber, providing not only the magnitude of birefringence but also the direction of any external pressure applied to the fiber.


Landen Doty

Assessing the Effects of Source Language on Binary Similarity Tools

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Prasad Kulkarni, Chair
Perry Alexander
Alex Bardas
Drew Davidson

Abstract

Binary similarity is a fundamental technique that enables software analysis practitioners to compare machine-level code at scale and with fine granularity. With application in software reverse engineering, vulnerability research, malware attribution and more, state-of-the-art binary similarity tools have undergone thorough research and development to account for variations in compilers, optimizations, machine architectures, and even obfuscations. And, although these tools aim to compare and detect binary-level code segments generated from similar or identical source code, no preexisting work has investigated the effects of source languages other than C and C++. This thesis addresses this research gap by presenting a thorough investigation of SOTA binary similarity tools when applied to modern compiled languages, Rust and Golang.

To adequately evaluate the capabilities of the available binary similarity approaches, this work includes three distinct tools - BSim, a new component of the Ghidra Software Reverse Engineering Framework, which utilizes a clustering based similarity mechanism; BinDiff, an industry-recognized tool using graph-based comparisons; and jTrans, a BERT-based model fine-tuned to the binary similarity task. First, to enable this work, we introduce a new dataset of Rust and Golang binaries compiled from leading open-source projects in the Homebrew and Arch Linux repositories. Comprised of 800 binaries and over 1 million functions, this dataset was built to represent a broad range of implementation styles, application diversity, and source language features. Next, the main investigation of this thesis is presented wherein we asses each approach's ability to accurately report semantically equivalent functions compiled from the same source code. Results across the three tools reveal a systematic degradation of precision when comparing binaries produced by Rust and Go rather than those produced by C and C++. Finally, we provide a technical demonstration which highlights the implications of these results and discuss near- and long-term solutions to more adequately equip binary analysis practitioners.  
 


Past Defense Notices

Dates

Jace Kline

A Framework for Assessing Decompiler Inference Accuracy of Source-Level Program Constructs

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Prasad Kulkarni, Chair
Perry Alexander
Bo Luo


Abstract

Decompilation is the process of reverse engineering a binary program into an equivalent source code representation with the objective to recover high-level program constructs such as functions, variables, data types, and control flow mechanisms. Decompilation is applicable in many contexts, particularly for security analysts attempting to decipher the construction and behavior of malware samples. However, due to the loss of information during compilation, this process is naturally speculative and thus is prone to inaccuracy. This inherent speculation motivates the idea of an evaluation framework for decompilers.

In this work, we present a novel framework to quantitatively evaluate the inference accuracy of decompilers, regarding functions, variables, and data types. Within our framework, we develop a domain-specific language (DSL) for representing such program information from any "ground truth" or decompiler source. Using our DSL, we implement a strategy for comparing ground truth and decompiler representations of the same program. Subsequently, we extract and present insightful metrics illustrating the accuracy of decompiler inference regarding functions, variables, and data types, over a given set of benchmark programs. We leverage our framework to assess the correctness of the Ghidra decompiler when compared to ground truth information scraped from DWARF debugging information. We perform this assessment over a subset of the GNU Core Utilities (Coreutils) programs and discuss our findings.


Jaypal Singh

EvalIt: Skill Evaluation using block chain

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Drew Davidson, Chair
David Johnson
Hongyang Sun


Abstract

Skills validation is a key issue when hiring workers. Companies and universities often face difficulties in determining an applicant's skills because certification of the skills claimed by an applicant is usually not readily verifiable and verification is costly. Also, from applicant's perspective, skill evaluation from industry expert is valuable instead of learning a generalized course with certification. Most of the certification programs are easy and proved not so fruitful in learning the required work skills. Blockchain has been proposed in the literature for functional verification and tamper-proof information storage in a decentralized way. "EvalIt" is a blockchain-based Dapp that addresses the above issues and guarantees some desirable properties. The Dapp facilitates skill evaluation efforts through payments using tokens that it collects from payments made by users of the platform.


Soma Pal

Properties of Profile-guided Compiler Optimization with GCC and LLVM

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Prasad Kulkarni, Chair
Mohammad Alian
Tamzidul Hoque


Abstract

Profile-guided optimizations (PGO) are a class of sophisticated compiler transformations that employ information regarding the profile or execution time behavior of a program to improve program performance, typically speed. PGOs for popular language platforms, like C, C++, and Java, are generally regarded as a mature and mainstream technology and are supported by most standard compilers. Consequently, properties and characteristics of PGOs are assumed to be established and known but have rarely been systematically studied with multiple mainstream compilers.

The goal of this work is to explore and report some important properties of PGOs in mainstream compilers, specifically GCC and LLVM in this work. We study the performance delivered by PGOs at the program and function-level, impact of different execution profiles on PGO performance, and compare relative PGO benefit delivered by different mainstream compilers. We also built the experimental framework to conduct this research. We expect that our work will help focus future research and assist in building frameworks to field PGOs in actual systems.


Samyak Jain

Monkeypox Detection Using Computer Vision

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Prasad Kulkarni, Chair
David Johnson, (Co-Chair)
Hongyang Sun


Abstract

As the world recovers from the damage caused by the spread of COVID-19, the monkeypox virus poses a new threat of becoming a global pandemic. The monkeypox virus itself is not as deadly or contagious as COVID-19, but many countries report new patient cases every day. So it wouldn't be surprising if the world faces another pandemic due to lack of proper precautions. Recently, deep learning has shown great potential in image-based diagnostics, such as cancer detection, tumor cell identification, and COVID-19 patient detection. Therefore, since monkeypox has infected human skin, a similar application can be employed in diagnosing monkeypox-related diseases, and this image can be captured and used for further disease diagnosis. This project presents a deep learning approach for detecting monkeypox disease from skin lesion images. Several pre-trained deep learning models, such as ResNet50 and Mobilenet, are deployed on the dataset to classify monkeypox and other diseases.


Grace Young

Quantum Algorithms & the Hidden Subgroup Problem

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Matthew Moore, Chair
Perry Alexander
Esam El-Araby
Cuncong Zhong
KC Kong

Abstract

In the last century, we have seen incredible growth in the field of quantum computing. Quantum computing offers us the opportunity to find efficient solutions to certain computational problems which are intractable on classical computers. One class of problems that seems to benefit from quantum computing is the Hidden Subgroup Problem (HSP). In the following proposal, we will examine basics of quantum computing as well as the current research surrounding the HSP. We will also discuss the importance of the HSP and its relation to other popular problems such as Integer Factoring, Discrete Logarithm, Shortest Vector, and Subset Sum problems.

The proposed research aims to develop a quantum algorithmic polynomial-time reduction to special cases of the HSP where the parameterizing group is the Dihedral group. This problem is known as the Dihedral HSP (DHSP). The usual approach to the HSP relies on harmonic analysis in the domain of the problem and the best-known algorithm using this approach is sub-exponential, but still super-polynomial. The algorithm we have designed focuses on the structure encoded in the codomain which uses this structure to direct a “walk” down the subgroup lattice terminating at the hidden subgroup.

 


Victor Alberto Lopez Nikolskiy

Maximum Power Point Tracking For Solar Harvesting Using Industry Implementation Of Perturb And Observe with Integrated Circuits

When & Where:


Eaton Hall, Room 2001B

Committee Members:

James Stiles, Chair
Christopher Allen
Patrick McCormick


Abstract

This project is not a new idea or an innovative method, this project consists in the implementation of techniques already used in the consumer industry.

The purpose of this project is to implement a compact and low-weight Maximum Power Point Tracking (MPPT) Solar Harvesting Device intended for a small fixed-wing unmanned aircraft. For the aircraft selected, the load could be subsidized up to 25% by the MPPT device and installed solar cells.

The MPPT device was designed around the Texas Instruments SM72445 Integrated Circuit and its technical documentation. The prototype was evaluated using a Photovoltaic Profile Emulator Power Supply and a LiPo battery.

The device performed MPPT in one of the different tested current-voltage (IV) profiles reaching Maximum Power Point (MPP).  The device did not maintain the MPP. Under an additional external DC load or different IV profiles, the emulator operates in prohibited operating conditions. The probable cause of the failed behavior is due to instability in the emulator’s output. The inputs to the controller and response behaviors of the H-bridge circuit were as expected and designed.


Koyel Pramanick

Detection of measures devised by the compiler to improve security of the generated code

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Prasad Kulkarni, Chair
Drew Davidson
Fengjun Li
Bo Luo
John Symons

Abstract

The main aim of the thesis is to identify provisions employed by the compiler to ensure the security of any arbitrary binary. These provisions are security techniques applied automatically by the compiler during the system build process. Compilers provide a number of security checks, that can be applied statically or at compile time, to protect the software from attacks that target code vulnerabilities. Most compilers use warnings to indicate potential code bugs and run-time security checks which add instrumentation code in the binary to detect problems during execution. Our first work is to develop a language-agnostic and compiler-agnostic experimental framework which determines the presence of targeted compiler-based run-time security checks in any binary. Our next work is focused on exploring if unresolved compiler generated warnings can be detected in the binary when the source code is not available.


Ben Liu

Computational Microbiome Analysis: Method Development, Integration and Clinical Applications

When & Where:


Eaton Hall, Room 1

Committee Members:

Cuncong Zhong, Chair
Esam El-Araby
Bo Luo
Zijun Yao
Mizuki Azuma

Abstract

Metagenomics is the study of microbial genomes from one common environment and in most cases, metagenomic data refer to the whole-genome shotgun sequencing data of the microbiota, which are fragmented DNA sequences from all regions in the microbial genomes. Because the data are generated without laboratory culture, they provide a more unbiased insight to and uniquely enriched information of the microbial community. Currently many researchers are interested in metagenomic data, and a sea of software exist for various purposes at different analyzing stages. Most researchers build their own analyzing pipeline on their expertise, and the pipelines for the same purpose built by two researchers might be disparate, thus affecting the conclusion of experiment. 

My research interests involve: (1) We first developed an assembly graph-based ncRNA searching tools, named DRAGoM, to improve the searching quality in metagenomic data. (2) We proposed an automatic metagenomic data analyzing pipeline generation system to extract, organize and exploit the enormous amount of knowledge available in literature. The system consists of two work procedures: construction and generation. In the construction procedure, the system takes a corpus of raw textual data, and updates the constructed pipeline network, whereas in the genera- tion stage, the system recommends analyzing pipeline based on the user input. (3) We performed a meta-analysis on the taxonomic and functional features of the gut microbiome from non-small cell lung cancer patients treated with immunotherapy, to establish a model to predict if a patient will benefit from immunotherapy. We systematically studied the taxonomical characteristics of the dataset and used both random forest and multilayer perceptron neural network models to predict the patients with progressing-free survival above 6 months versus those below 3 months.


Matthew Showers

Software-based Runtime Protection of Secret Assets in Untrusted Hardware under Zero Trust

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Tamzidul Hoque, Chair
Alex Bardas
Drew Davidson


Abstract

The complexity of the design and fabrication process of electronic devices is advancing with their ability to provide wide-ranging functionalities including data processing, sensing, communication, artificial intelligence, and security. Due to these complexities in the design and manufacturing process and associated time and cost, system developers often prefer to procure off-the-shelf components directly from the market instead of developing custom Integrated Circuits (ICs) from scratch. Procurement of Commerical-Off-The-Shelf (COTS) components reduces system development time and cost significantly, enables easy integration of new technologies, and facilitates smaller production runs. Moreover, since various companies use the same COTS IC, they are generally available in the market for a long period and are easy to replace. 

Although utilizing COTS parts can provide many benefits, it also introduces serious security concerns. None of the entities in the COTS IC supply chain are trusted from a consumer's perspective, leading to a ”Zero Trust” supply chain threat model. Any of these entities could introduce hidden malicious circuits or hardware Trojans within the component that could help an attacker in the field extract secret information (e.g., cryptographic keys) or cause a functional failure. Existing solutions to counter hardware Trojans are inapplicable in a zero trust scenario as they assume either the design house or the foundry to be trusted. Moreover, many solutions require access to the design for analysis or modification to enable the countermeasure. 

In this work, we have proposed a software-oriented countermeasure to ensure the confidentiality of secret assets against hardware Trojan attacks in untrusted COTS microprocessors. The proposed solution does not require any supply chain entity to be trusted and does not require analysis or modification of the IC design.  

To protect secret assets in an untrusted microprocessor, the proposed method leverages the concept of residue number coding to transform the software functions operating on the asset to be homomorphic. We have presented a detailed security analysis to evaluate the confidentiality of a secret asset under Trojan attacks using the secret key of the Advanced Encryption Standard (AES) program as a case study. Finally, to help streamline the application of this protection scheme, we have developed a plugin for the LLVM compiler toolchain that integrates the solution without requiring extensive source code alterations.


Madhuvanthi Mohan Vijayamala

Camouflaged Object Detection in Images using a Search-Identification based framework

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Prasad Kulkarni, Chair
David Johnson (Co-Chair)
Zijun Yao


Abstract

While identifying an object in an image is almost an instantaneous task for the human visual perception system, it takes more effort and time to process and identify a camouflaged object - an entity that flawlessly blends with the background in the image. This explains why it is much more challenging to enable a machine learning model to do the same, in comparison to generic object detection or salient object detection.

This project implements a framework called Search Identification Network, that simulates the search and identification pattern adopted by predators in hunting their prey and applies it to detect camouflaged objects. The efficiency of this framework in detecting polyps in medical image datasets is also measured.