Defense Notices


All students and faculty are welcome to attend the final defense of EECS graduate students completing their M.S. or Ph.D. degrees. Defense notices for M.S./Ph.D. presentations for this year and several previous years are listed below in reverse chronological order.

Students who are nearing the completion of their M.S./Ph.D. research should schedule their final defenses through the EECS graduate office at least THREE WEEKS PRIOR to their presentation date so that there is time to complete the degree requirements check, and post the presentation announcement online.

Upcoming Defense Notices

Muhammad Momin Rahman

Development of a Signal Flow Graph-Based De-Embedding Framework for Broadband Passive Linear Multiport RF & Microwave Networks with Applications to Power Splitters

When & Where:


Nichols Hall, Room 317 (Richard K. Moore Conference Room)

Committee Members:

Carl Leuschen, Chair
Kenneth Demarest
Fernando Rodriguez-Morales


Abstract

Discrete passive components, including resistors, capacitors, inductors, and transformers, are fundamental to broadband 75-Ω radio-frequency (RF) systems, particularly in cable television (CATV) and hybrid fiber-coaxial (HFC) networks. These components are incorporated into power splitters, couplers, power inserters, and amplifiers to achieve desired frequency responses, impedance matching, and signal transmission characteristics. However, their electrical behavior becomes increasingly complex at higher frequencies due to parasitic resistance, inductance, capacitance, electromagnetic coupling, and distributed transmission-line effects. Consequently, accurate broadband characterization is essential for predicting component behavior and developing representative RF circuit models for simulation purposes.

A significant challenge arises when characterizing passive components with limited or unavailable manufacturer specifications, particularly when existing component inventories must be evaluated for broadband applications. Conventional measurement instruments, including digital multimeters, LCR meters, oscilloscopes, and function generators, generally lack the frequency range required for comprehensive RF characterization from 5 MHz to 3 GHz. Vector network analyzers (VNAs) enable complex scattering-parameter measurements across this frequency range; however, the measured response includes contributions from test fixtures, interconnections, and parasitic discontinuities that must be distinguished from the intrinsic response of the device under test (DUT).

This project investigates the development of a signal flow graph (SFG)-based de-embedding framework for broadband passive linear multiport RF networks. The methodology incorporates series-through and shunt-through DUT (CPWG) fixture configurations, conventional Open-Short and Short-Open de-embedding techniques, followed by lumped-element and distributed transmission-line representations of fixture parasitics. Scattering-parameter and ABCD-parameter analysis are employed to characterize fixture responses, while signal flow graph derivations provide a mathematical basis for analyzing interconnected multiport networks. Particular attention is given to fixture asymmetry, impedance discontinuities, and multiple signal propagation paths that complicate the extension of conventional two-port characterization methods to higher-order networks.

Experimental validation is conducted through the characterization of passive components with published impedance and quality-factor characteristics, enabling comparisons between extracted measurements, equivalent-circuit models, and manufacturer reference data. The methodology is subsequently applied to broadband power splitter networks used in CATV/HFC systems to investigate the accuracy and applicability of the proposed multiport de-embedding framework. The project aims to establish a systematic approach to broadband passive component characterization that integrates fixture modeling, network theory, and experimental measurement while reducing dependence on proprietary characterization data.


Fairuz Shadmani Shishir

Efficient and Privacy-Preserving Biomedical AI: From Precision Therapeutics Design to Private Clinical Prediction

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Sumaiya Shomaji, Chair
Tamzidul Hoque
Cuncong Zhong
Bishnu Sarker
Michael Hageman

Abstract

Accurate protein characterization, precision therapeutics design, and privacy-preserving clinical modeling are important challenges in biomedical artificial intelligence (AI). Addressing these challenges requires computational frameworks that are not only accurate and scalable but also capable of supporting reliable decision-making. This dissertation develops efficient, scalable, and reliable computational frameworks across three areas: Computational characterization of proteins, precision therapeutics design, and privacy-aware clinical representation learning. The first part of this dissertation focuses on efficient protein characterization at both the sequence and residue levels. GPCR-SLM, a knowledge-distilled small protein language model, classifies G-protein-coupled receptors (GPCRs), a family targeted by approximately 35% of FDA-approved drugs. Across 86 families, GPCR-SLM achieves 99% accuracy, outperforming BLAST (86.4%) and HMMER (91%), with a 33.5-fold speedup over large protein language models. Extending characterization to the residue level, a protein-metal-ion binding site prediction framework evaluates five protein language models and incorporates positional encoding to capture long-range dependencies. Under 10-fold cross-validation, it achieves a Matthews correlation coefficient of 0.89, with precision, recall, and F1 scores exceeding 95% across six metal ions.

Building on these protein characterization methods, the second part advances precision therapeutics design through uncertainty quantification and generative learning for therapeutic antibodies. NbBayesLM combines protein language model embeddings and physicochemical descriptors in a Bayesian neural network to predict nanobody thermostability. Evaluated on 10,630 VHH sequences, it achieves a mean absolute error of 1.89C and an R2 of 0.67 while estimating epistemic and aleatoric uncertainty to support candidate prioritization. CIgFlow employs classifier-free guidance to generate de novo, antigen-conditioned antibody sequences without fixed scaffolds or paired structural data. Generated sequences achieve a median OASis humanness score of 0.90 and mean predicted local distance difference test (pLDDT) score of 85.0, demonstrating promising novelty and diversity. The third part addresses privacy-aware clinical modeling using electrocardiograms (ECGs), which encode diagnostic information and sensitive demographic attributes. A variational autoencoder with dual discriminators suppresses demographic information while preserving clinically relevant representations.

Collectively, this dissertation advances efficient protein representation learning, computational antibody design, and privacy-preserving clinical AI, contributing methodological foundations for trustworthy biomedical applications.


Arturo Solorio

Performance Analysis of Mismatched Filtering for Stochastic Waveforms

When & Where:


Nichols Hall, Room 246 (Executive Conference Room)

Committee Members:

Patrick McCormick, Chair
Shannon Blunt
Charles Mohr


Abstract

Mismatched filtering (MMF) is a widely used pulse compression technique that reduces cross-correlation sidelobe levels at the cost of some loss in signal-to-noise ratio (SNR). Applying MMF to stochastically generated radar waveforms makes the filter's performance inherently random, which can be problematic if the variability is excessive. As well as the computational cost being relatively high, as per pulse, a new MMF optimization is required. In this thesis, the feasibility of a fixed MMF strategy for stochastic radar waveforms to reduce computational cost is investigated. Two MMF formulations were evaluated, the optimal MMF (Diagonal Loaded Filter) and a projection-based MMF. Both filters were designed to minimize sidelobe energy within specified regions of the Cross-Ambiguity Function (CAF) for Stochastic Waveform Generation (StoWGe) waveforms, and their performance was assessed across multiple time-bandwidth products and sidelobe-regions for two center frequencies, Fc = 30 Ghz and Fc  = 3.5 Ghz. The MMF performance was characterized using SNR loss and sidelobe depth over hundreds of trails. It is observed that the variability in SNR and sidelobe depth decreases as the waveform time-bandwdith product and the sidelobe region targeted for minimization increase, although the Fc = 3.5 GHz cases exhibited a plateau in achievable sidelobe depth. Additional validation using 1000-trail histograms and loop-back testing confirmed the robustness for the fixed MMF approach for higher time-bandwidth product stochastic waveforms. Where, overall, the results demonstrate that a fixed MMF strategy is feasible for stochastic waveforms when the time-bandwdith product and sidelobe region are sufficiently large. Furthermore, the Projection-based MMF provides a suboptimal alternative to the optimal MMF as it achieves comparable MMF performance when constrained to similar SNR-loss and may be desirable when the size of the domination eigenvalues is small relative to the filter length and can be efficiency obtained.


Past Defense Notices

Dates

SERGIO LEON CUEN

Visualization and Performance Analysis of N-Body Dynamics Comparing GPGPU Approaches

When & Where:


2001B Eaton Hall

Committee Members:

Jim Miller, Chair
Man Kong
Suzanne Shontz


Abstract

With the advent of general-purpose programming tools and newer GPUs, programmers now have access to a more flexible general-purpose approach to using GPUs for something other than graphics. With single instruction stream, multiple data streams (SIMD), the same instruction is executed by multiple processors using different data streams. GPUs are SIMD computers that exploit data-level parallelism by applying the same operations to multiple items of data in parallel. There are many areas where GPUs can be used for general-purpose computing. We have chosen to focus on a project in the astrophysics area of scientific computing called N-body simulation which computes the evolution of a system of bodies that interact with each other. Each body represents an object such as a planet or a star, and each exerts a gravitational force on all the others. It is performed by using a numerical integration method to compute the interactions among the system of bodies, and begins with the initial conditions of the system which are the masses and starting position and velocity of every body. These data are repeatedly used to compute the gravitational force between all bodies of the system to show updates on screen. We investigate alternative implementation approaches to the problem in an attempt to determine the factors that maximize its performance, including speed and accuracy. Specifically, we compare an OpenCL approach to one based on using OpenGL Compute Shaders. We select these two for comparison to generate real-time interactive displays with OpenGL. Ultimately, we anticipate our results will be generalizable to other APIs (e.g., CUDA) as well as to applications other than the N-Body problem. A comparison of various numerical integration and memory optimization techniques is also included in our analysis in an attempt to understand how they work in the SIMD GPGPU environment and how they contribute to our performance metrics. We conclude that, for our particular implementation of the problem, taking advantage of efficiently using local memory considerably increases performance.


BHARGHAVA DESU

VIN Database Application to Assist National Highway Traffic Safety Agency

When & Where:


246 Nichols Hall

Committee Members:

Prasad Kulkarni, Chair
Andy Gill
Richard Wang


Abstract

The number of vehicle manufacturers and the number of vehicles produced have been significantly increasing each year. With more vehicles on road, the number of accidents on the National Highways in the US increased notably. NHTSA (National Highway Traffic Safety Agency) is a federal agency which works towards preventing vehicle crashes and their attendant costs. They plan and execute several operations and control measures to find and solve the problems causing accidents. One such initiative is to analyze the primary causes of all the vehicle crashes and maintain a streamlined data of vehicle Identification catalog customized for DOT and NHTSA. Maintaining a data on about 250+ millions of vehicles and analyze them needs a robust database and an application for its maintenance. At StrongBridge Corporation, we developed VPICLIST, an application for NHTSA to assist their analytic projects with data entry and pattern decoding of VIN information catalog. The application employs precise pattern matching techniques to dump data into distributed databases which in turn collaborate to a central database of NHTSA. It allows decoding of VIN each at a time by the public and also decoding thousands of VINS simultaneously for internal use of NHTSA. To hold and operate upon several PBs of data, insertion and retrieval process of the application emulates a distributed architecture. The application is developed in Java and uses Oracle enterprise database for distributed small collections and NoSQL system for the central database.


VENKATA SUBRAMANYA HYMA YADAVALLI

Framework for Shear Wave Velocity 2D Profiling with Topography

When & Where:


246 Nichols Hall

Committee Members:

Prasad Kulkarni, Chair
Perry Alexander
Heechul Yun


Abstract

The study of shear wave velocity (Vs) of near surface materials has been one of the primary areas of interest in seismic analyses. ‘Vs’ serves as the best indicator in evaluating the stiffness of a material from its shear modulus. One of the economical methods to obtain Vs profiling information is through the analysis of dispersion property of surface waves. SurfSeis4 - Software developed by the Kansas Geological Survey (KGS) utilizes Multichannel Analysis of Surface Waves (MASW) method to obtain shear wave velocity 2D (Surface location and depth) profiling. The profiling information is obtained in the form of a grid through inversion of dispersion curves. The Vs 2D map module of SurfSeis4, integrates the functionality of interpolating this grid to approximate the variation of shear wave velocity across the surface locations. The current project is an extension of the existing SurfSeis4 Vs 2D mapping module in its latest release of SurfSeis5 that incorporates topography in shear wave velocity variation and facilitates users with advanced image interpolation options.


LIYAO WANG

High Current Switch for Switching Power Supplies

When & Where:


2001B Eaton Hall

Committee Members:

Jim Stiles, Chair
Chris Allen
Glenn Prescott


Abstract

One of the main components in switching power supply is switch. However, there are two main negative issues the switch will cause in a switching power supply. The first one is that the power dissipation of the switch will be unimaginable high, especially when the current go through the switch gets higher. Secondly, because there are so many parasitic inductances and capacitances in the circuit, transient will cause problems when the operating state of the switch changes. In this project, P-Spice is used to design a qualify swith and suppress the negative effect as much as possible. The purpose of this project is to design a switch for hardware design in switching power supplies. Therefore, all the components used in P-Spice simulation are the actual models which is able to get from electronic market, and all the situations which may be happen in hardware design will be consider in the simulation. Both Mosfet and bipolar transistor switch will be discussed in the project. The project will give solutions for reducing the power dissipation cause by the switch and transient problems.


MANOGNA BHEEMINENI

Implementation and Comparison of FSA Filters

When & Where:


246 Nichols Hall

Committee Members:

Fengjun Li, Chair
Victor Frost
Bo Luo


Abstract

Packet Filtering is a process of filtering the packets based on the filters rules that are being defines by the user. The focus of this project is to implement and compare the performance of two different packet filtering techniques (SFSA and PFSA), that uses FSA(finite state automaton) for the filtering process. Stateless FSA(SFSA) is a packet filtering technique where an FSA is generated based on the input packet and the filtering criteria. Then succeed early algorithm is applied to the automaton which simplifies by the automaton by shortening long trails to the the final state which reduces the packet filtering time. It also uses transition compaction algorithm which helps in avoiding certain areas in packet inspection which are not necessary for packet filtering. 
PFSA (predicates of FSA) does the filtering based on predicates generated by the predicate evaluator. In this filtering process the FSA generated as state transitions which depend on the input symbol and also the predicate value. In order to simplify the FSA algorithms like predicates Cartesian product and predicates anticipation algorithms are being used. These algorithms consider all states that are possible and merge them to make the FSA deterministic. There is also a proto FSA that is being generated for the predicates to speed up the filtering process. 


SREENIVAS VEKAPU

Chemocaffe: A Platform providing Deep Learning as a Service to Cheminformatics Researchers

When & Where:


2001B Eaton Hall

Committee Members:

Luke Huan, Chair
Man Kong
Prasad Kulkarni


Abstract

Neural Networks were studied and applied to many research problems from a long time. With gaining popularity of deep neural networks in the area of machine learning, many researchers in various domains want to try deep learning framework. Deep learning requires lot of memory and high processing power. One way of doing it faster is to make use of GPUs which use distributed and parallel processing, thereby increasing speed. But because of the computation (lot of vector and matrix operations) deep learning requires, expensive infrastructure required (GPUs and clusters), hardware and software installation overhead, not many researchers prefer deep learning. The current application is a solution to cheminformatics problems using Convolutional Architecture for Fast Feature Embedding (Caffe) deep learning framework. The application provides a framework/service to researchers who want to try deep learning on their datasets. The application accepts datasets from users along with options for hyper parameter configuration, runs cross fold validation on the training dataset, and makes predictions on the test dataset. The (tuning) results of running caffe on the training dataset and predictions made on test dataset are sent to user via an email. The current version supports binary classification that predicts activity/inactivity of a chemical compound based on molecular fingerprints which are binary features.


YUFEI CHENG

Future Internet Routing Design for Massive Failures and Attacks

When & Where:


246 Nichols Hall

Committee Members:

James Sterbenz, Chair
Jiannong Cao
Victor Frost
Fengjun Li
Michael Vitevitch

Abstract

Given the high complexity and increasing traffic load of the current Internet, the geographically-correlated challenge caused by large-scale disasters or malicious attacks pose a significant threat to dependable network communications. To understand its characteristics, we start our research by first proposing a critical-region identification mechanism. Furthermore, the identified regions are incorporated into a new graph resilience metric, compensated Total Geographical Graph Diversity (cTGGD), which is capable of characterizing and differentiating resiliency levels for different topologies. We further propose the path geodiverse problem (PGD) that requires the calculation of a number of geographically disjoint paths, and two heuristics with less complexity compared to the optimal algorithm. We present two flow-diverse multi-commodity flow problems, a linear minimum-cost and a nonlinear delay-skew optimization problem to study the tradeoff among cost, end-to-end delay, and traffic skew on different geodiverse paths. We further prototype and integrate the solution from above models into our cross-layer resilient protocol stack, ResTP--GeoDivRP. Our protocol stack is implemented in the network simulator ns-3 and emulated in the KanREN testbed. By providing multiple geodiverse paths, our protocol stack provides better path protection than Multipath TCP (MPTCP) against geographically-correlated challenges. Finally, we analyze the mechanism attackers could utilize to maximize the attack impact and demonstrate the effectiveness of a network restoration plan. 


HARSHITH POTU

Android Application for Interactive Teaching

When & Where:


250 Nichols Hall

Committee Members:

Prasad Kulkarni, Chair
Esam El-Araby
Andy Gill


Abstract

In a world with enormously growing technologies and applications, most people use smart 
devices. This provides a means to develop smart applications that will be help students learn effectively. 
In this project, we develop a smart android application which will provide digital means of 
interaction between the professors and students. Instead of using traditional emails for every 
discussion, this application helps to broadcast multiple messages to the class through a single 
click. The students will also be able to follow multiple professors and participate in the active 
discussions. And also this application allows the users to send personal messages to the other 
users in order to participate in an active discussion. It provides unique logins to every student 
and professor. It uses mongoDB as the database and "parse" backend as a service.The main 
inspiration for this project was an application called Tophat. 


ABDULMALIK HUMAYED

Security Protection for Smart Cars — A CPS Perspective

When & Where:


246 Nichols Hall

Committee Members:

Bo Luo, Chair
Arvin Agah
Prasad Kulkarni
Heechul Yun
Prajna Dhar

Abstract

As the passenger vehicles evolve to be “smart”, electronic components, including communication, intelligent control and entertainment, are continuously introduced to new models and concept vehicles. The new paradigm introduces new features and benefits, but also brings new security issues, which is often overlooked in the industry as well as in the research community. 

Smart cars are considered cyber-physical systems (CPS) because of their integration of cyber- and physical- components. In recent years, various threats, vulnerabilities, and attacks have been discovered from different models of smart cars. In the worst- case scenario, external attackers may remotely obtain full control of the vehicle by exploiting an existing vulnerability. 

In this research, we investigate smart cars’ security from a CPS’ perspective and derive a taxonomy of threats, vulnerabilities, attacks, and controls. In addition, we investigate three security solutions that would improve the security posture of automotive networks. First, as automotive networks are highly vulnerable to Denial of Service (DoS) attacks, we investigate a solution that effectively mitigates such attacks, namely ID-Hopping. In addition, because several attacks have successfully exploited the poor separation between critical and non-critical components in the automotive networks, we propose to investigate the effectiveness of firewalls and Intrusion Detection Systems (IDS) to prevent and detect such exploitations. To evaluate our proposals, we built a test bench that is composed of five microcontrollers and a communication bus to simulate an automotive network. Simulations and experiments performed with the testbed demonstrates the effectiveness of ID-hopping against DoS attacks. 


CAITLIN McCOLLISTER

Predicting Author Traits Through Topic Modeling of Multilingual Social Media Text

When & Where:


246 Nichols Hall

Committee Members:

Bo Luo, Chair
Arvin Agah
Luke Huan


Abstract

One source of insight into the motivations of a modern human being is the text they write and post for public consumption online, in forms such as personal status updates, product reviews, or forum discussions. The task of inferring traits about an author based on their writing is often called "author profiling." One challenging aspect of author profiling in today’s world is the increasing diversity of natural languages represented on social media websites. Furthermore, the informal nature of such writing often inspires modifications to standard spelling and grammatical structure which are highly language-specific. 
These are some of the dilemmas that inspired a series of so-called "shared task" competitions, in which many participants work to solve a single problem in different ways, in order to compare their methods and results. This thesis describes our submission to one author profiling shared task in which 22 teams implemented software to predict the age, gender, and certain personality traits of Twitter users based on the content of their posts to the website. We will also analyze the performance and implementation of our system compared to those of other teams, all of which were described in open-access reports. 
The competition organizers provided a labeled training dataset of tweets in English, Spanish, Dutch, and Italian, and evaluated the submitted software on a similar but hidden dataset. Our approach is based on applying a topic modeling algorithm to an auxiliary, unlabeled but larger collection of tweets we collected in each language, and representing tweets from the competition dataset in terms of a vector of 100 topics. We then trained a random forest classifier based on the labeled training dataset to predict the age, gender and personality traits for authors of tweets in the test set. Our software ranked in the top half of participants in English and Italian, and the top third in Dutch.