Defense Notices


All students and faculty are welcome to attend the final defense of EECS graduate students completing their M.S. or Ph.D. degrees. Defense notices for M.S./Ph.D. presentations for this year and several previous years are listed below in reverse chronological order.

Students who are nearing the completion of their M.S./Ph.D. research should schedule their final defenses through the EECS graduate office at least THREE WEEKS PRIOR to their presentation date so that there is time to complete the degree requirements check, and post the presentation announcement online.

Upcoming Defense Notices

Fatima Al-Shaikhli

Optical Measurements Leveraging Coherent Fiber Optics Transceivers

When & Where:


Nichols Hall, Room 246 (Executive Conference Room)

Committee Members:

Rongqing Hui, Chair
Shannon Blunt
Shima Fardad
Alessandro Salandrino
Judy Wu

Abstract

Recent advancements in optical technology are invaluable in a variety of fields, extending far beyond high-speed communications. These innovations enable optical sensing, which plays a critical role across diverse applications, from medical diagnostics to infrastructure monitoring and automotive systems. This research focuses on leveraging commercially available coherent optical transceivers to develop novel measurement techniques to extract detailed information about optical fiber characteristics, as well as target information. Through this approach, we aim to enable accurate and fast assessments of fiber performance and integrity, while exploring the potential for utilizing existing optical communication networks to enhance fiber characterization capabilities. This goal is investigated through three distinct projects: (1) fiber type characterization based on intensity-modulated electrostriction response, (2) coherent Light Detection and Ranging (LiDAR) system for target range and velocity detection through different waveform design, including experimental validation of frequency modulation continuous wave (FMCW) implementations and theoretical analysis of orthogonal frequency division multiplexing (OFDM) based approaches and (3) birefringence measurements using a coherent Polarization-sensitive Optical Frequency Domain Reflectometer (P-OFDR) system.

Electrostriction in an optical fiber is introduced by interaction between the forward propagated optical signal and the acoustic standing waves in the radial direction resonating between the center of the core and the cladding circumference of the fiber. The response of electrostriction is dependent on fiber parameters, especially the mode field radius. We demonstrated a novel technique of identifying fiber types through the measurement of intensity modulation induced electrostriction response. As the spectral envelope of electrostriction induced propagation loss is anti-symmetrical, the signal to noise ratio can be significantly increased by subtracting the measured spectrum from its complex conjugate. We show that if the field distribution of the fiber propagation mode is Gaussian, the envelope of the electrostriction-induced loss spectrum closely follows a Maxwellian distribution whose shape can be specified by a single parameter determined by the mode field radius.        

We also present a self-homodyne FMCW LiDAR system based on a coherent receiver. By using the same linearly chirped waveform for both the LiDAR signal and the local oscillator, the self-homodyne coherent receiver performs frequency de-chirping directly in the photodiodes, significantly simplifying signal processing. As a result, the required receiver bandwidth is much lower than the chirping bandwidth of the signal. Simultaneous multi-target of range and velocity detection is demonstrated experimentally. Furthermore, we explore the use of commercially available coherent transceivers for joint communication and sensing using OFDM waveforms.

In addition, we demonstrate a P-OFDR system utilizing a digital coherent optical transceiver to generate a linear frequency chirp via carrier-suppressed single-sideband modulation. This method ensures linearity in chirping and phase continuity of the optical carrier. The coherent homodyne receiver, incorporating both polarization and phase diversity, recovers the state of polarization (SOP) of the backscattered optical signal along the fiber, mixing with an identically chirped local oscillator. With a spatial resolution of approximately 5 mm, a 26 GHz chirping bandwidth, and a 200 us measurement time, this system enables precise birefringence measurements. By employing three mutually orthogonal SOPs of the launched optical signal, we measure relative birefringence vectors along the fiber.


Fairuz Shadmani Shishir

Toward Trustworthy Biomedical AI: Efficient Protein Language Models and Privacy-Aware Clinical Representations

When & Where:


Nichols Hall, Room 246 (Executive Conference Room)

Committee Members:

Sumaiya Shomaji, Chair
Tamzidul Hoque
Cuncong Zhong
Bishnu Sarker
Michael Hageman

Abstract

Accurate biological sequence annotation and privacy-aware clinical modeling are central challenges in modern computational biology and biomedical AI. This dissertation presents scalable and interpretable deep learning frameworks spanning protein family classification, metal-ion binding prediction, and privacy-preserving electrocardiogram (ECG) representation learning. First, we introduce GPCR-SLM, a lightweight transformer-based framework for high-resolution classification of G-protein coupled receptors (GPCRs), one of the largest and most pharmacologically important protein families, targeted by approximately 35% of FDA-approved drugs. Unlike traditional homology-based tools such as BLAST and HMMER, which struggle to distinguish closely related families with low sequence similarity, our knowledge-distilled small language model achieves 99% accuracy across 86 GPCR families. The framework significantly outperforms BLAST (86.4%) and HMMER (91%) while delivering a 33.5× computational speedup compared to large protein language models, enabling scalable functional annotation as protein databases continue to expand. 

Second, we present an end-to-end deep learning pipeline for protein–metal-ion binding prediction. Binding site annotation is traditionally labor-intensive and limited by handcrafted features or predefined residue sets. We systematically evaluate five state-of-the-art protein language models and incorporate positional encoding to capture long-range residue dependencies. Our approach achieves a Matthews Correlation Coefficient (MCC) of 0.89 with precision, recall, and F1 scores exceeding 95% for six major metal ions under 10-fold cross-validation, demonstrating robust predictive performance and improved biological interpretability. Finally, we address fairness and privacy in clinical AI through a variational autoencoder (VAE) framework for ECG representation learning. Because ECGs inherently encode sensitive soft biometrics such as sex, age, and race, we design a dual-discriminator architecture that suppresses demographic information while preserving clinically relevant signals. The reconstructed ECGs substantially reduce demographic identifiability while maintaining strong predictive performance for reduced left ventricular ejection fraction, left ventricular hypertrophy, and 5-year mortality. 

Collectively, this work advances parameter-efficient, scalable, and privacy-conscious deep learning methodologies for both molecular and clinical domains, bridging computational protein science and trustworthy biomedical AI. 


Past Defense Notices

Dates

Lohithya Ghanta

Used Car Analytics

When & Where:


Eaton Hall, Room 2001B

Committee Members:

David Johnson, Chair
Morteza Hashemi
Prasad Kulkarni


Abstract

The used car market is characterized by significant pricing variability, making it challenging for buyers and sellers to determine fair vehicle values. To address this, the project applies a machine learning–driven approach to predict used car prices based on real market data extracted from Cars.com. Following extensive data cleaning, feature engineering, and exploratory analysis, several predictive models were developed and evaluated. Among these, the Stacking Regressor demonstrated superior performance, effectively capturing non-linear pricing patterns and achieving the highest accuracy with the lowest prediction error. Key insights indicate that vehicle age and mileage are the primary drivers of price depreciation, while brand and vehicle category exert notable secondary influence. The resulting pricing model provides a data-backed, transparent framework that supports more informed decision-making and promotes fairness and consistency within the used car marketplace.


Rajmal Shaik

A Human-Guided Approach to Context-Aware SQL Generation in Multi-Agent Frameworks

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Dongjie Wang, Chair
Rachel Jarvis
David Johnson


Abstract

Querying information from relational databases often requires proficiency in SQL, creating a steep learning curve for users who lack programming or database management experience. Text-to-SQL systems aim to bridge this gap by automatically converting natural language questions into executable SQL statements. In recent years, multi-agent frameworks have gained traction for this task, as they enable complex query generation to be decomposed into specialized subtasks such as schema selection based on user intent, SQL synthesis, and refinement of SQL queries through execution-based error correction. This work explores the integration of a human feedback component within a multi-agent Text-to-SQL framework. Human input is introduced after the selector agent identifies relevant schemas and tables, offering targeted guidance before SQL generation. The objective is to examine how such feedback can improve the system’s accuracy and contextual understanding of queries. The implementation leverages OpenAI’s GPT-4.1 mini and GPT-4.1 nano models as the underlying language components. The evaluation is carried out using a standard Text-to-SQL benchmark dataset, focusing on key performance metrics such as execution accuracy and validity efficiency scores.


Ashish Adhikari

Towards assessing the security of program binaries

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Prasad Kulkarni, Chair
Alex Bardas
Fengjun Li
Bo Luo

Abstract

Software vulnerabilities are widespread, often resulting from coding weaknesses and poor development practices. These vulnerabilities can be exploited by attackers, posing risks to confidentiality, integrity, and availability. To protect themselves, end-users of software may have an interest in knowing whether the software they purchase, and use is secure from potential attacks. Our work is motivated by this need to automatically assess and rate the security properties of binary software.

While many researchers focus on developing techniques and tools to detect and mitigate vulnerabilities in binaries, our approach is different. We aim to determine whether the software has been developed with proper care. Our hypothesis is that software created with meticulous attention to security is less likely to contain exploitable vulnerabilities. As a first step, we examined the current landscape of binary-level vulnerability detection. We categorized critical coding weaknesses in compiled programming languages and conducted a detailed survey comparing static analysis techniques and tools designed to detect these weaknesses. Additionally, we evaluated the effectiveness of open-source CWE detection tools and analyzed their challenges. To further understand their efficacy, we conducted independent assessments using standard benchmarks.

To determine whether software is carefully and securely developed, we propose several techniques. So far, we have used machine learning and deep learning methods to identify the programming language of a binary at the functional level, enabling us to handle complex cases like mixed-language binaries and we assess whether vulnerable regions in the binary are protected with appropriate security mechanisms. Additionally, we explored the feasibility of detecting secure coding practices by examining adherence to SonarQube’s security-related coding conventions.

Next, we investigate whether compiler warnings generated during binary creation are properly addressed. Furthermore, we also aim to optimize the array bounds detection in the program binary. This enhanced array bounds detection will also increase the effectiveness of detecting secure coding conventions that are related to memory safety and buffer overflow vulnerabilities.

Our ultimate goal is to combine these techniques to rate the overall security quality of a given binary software.


Bayn Schrader

Implementation and Analysis of an Efficient Dual-Beam Radar-Communications Technique

When & Where:


Nichols Hall, Room 246 (Executive Conference Room)

Committee Members:

Patrick McCormick, Chair
Shannon Blunt
Jonathan Owen


Abstract

Fully digital arrays enable realization of dual-function radar-communications systems which generate multiple simultaneous transmit beams with different modulation structures in different spatial directions. These spatially diverse transmissions are produced by designing the individual wave forms transmitted at each antenna element that combine in the far-field to synthesize the desired modulations at the specified directions. This thesis derives a look-up table (LUT) implementation of the existing Far-Field Radiated Emissions Design (FFRED) optimization framework. This LUT implementation requires a single optimization routine for a set of desired signals, rather than the previous implementation which required pulse-to-pulse optimization, making the LUT approach more efficient. The LUT is generated by representing the waveforms transmitted by each element in the array as a sequence of beamformers, where the LUT contains beamformers based on the phase difference between the desired signal modulations. The globally optimal beamformers, in terms of power efficiency, can be realized via the Lagrange dual problem for most beam locations and powers. The Phase-Attached Radar-Communications (PARC) waveform is selected for the communications waveform alongside a Linear Frequency Modulated (LFM) waveform for the radar signal. A set of FFRED LUTs are then used to simulate a radar transmission to verify the utility of the radar system. The same LUTs are then used to estimate the communications performance of a system with varying levels of the array knowledge uncertainty.


Will Thomas

Static Analysis and Synthesis of Layered Attestation Protocols

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Perry Alexander, Chair
Alex Bardas
Drew Davidson
Sankha Guria
Eileen Nutting

Abstract

Trust is a fundamental issue in computer security. Frequently, systems implicitly trust in other

systems, especially if configured by the same administrator. This fallacious reasoning stems from the belief

that systems starting from a known, presumably good, state can be trusted. However, this statement only

holds for boot-time behavior; most non-trivial systems change state over time, and thus runtime behavior is

an important, oft-overlooked aspect of implicit trust in system security.

    To address this, attestation was developed, allowing a system to provide evidence of its runtime behavior to a

verifier. This evidence allows a verifier to make an explicit informed decision about the system’s trustworthiness.

As systems grow more complex, scalable attestation mechanisms become increasingly important. To apply

attestation to non-trivial systems, layered attestation was introduced, allowing attestation of individual

components or layers, combined into a unified report about overall system behavior. This approach enables

more granular trust assessments and facilitates attestation in complex, multi-layered architectures. With the

complexity of layered attestation, discerning whether a given protocol is sufficiently measuring a system, is

executable, or if all measurements are properly reported, becomes increasingly challenging.

    In this work, we will develop a framework for the static analysis and synthesis of layered attestation protocols,

enabling more robust and adaptable attestation mechanisms for dynamic systems. A key focus will be the

static verification of protocol correctness, ensuring the protocol behaves as intended and provides reliable

evidence of the underlying system state. A type system will be added to the Copland layered attestation

protocol description language to allow basic static checks, and extended static analysis techniques will be

developed to verify more complex properties of protocols for a specific target system. Further, protocol

synthesis will be explored, enabling the automatic generation of correct-by-construction protocols tailored to

system requirements.


David Felton

Optimization and Evaluation of Physical Complementary Radar Waveforms

When & Where:


Nichols Hall, Room 246 (Executive Conference Room)

Committee Members:

Shannon Blunt, Chair
Rachel Jarvis
Patrick McCormick
James Stiles
Zsolt Talata

Abstract

In high dynamic-range environments, matched-filter radar performance is often sidelobe-limited with correlation error being fundamentally constrained by the TB of the collective emission. To contend with the regulatory necessity of spectral containment, the gradient-based complementary-FM framework was developed to produce complementary sidelobe cancellation (CSC) after coherently combining responses from distinct pulses from within a pulse-agile emission. In contrast to most complementary subsets, which were discovered via brute force under the notion of phase-coding, these comp-FM waveform subsets achieve CSC while preserving hardware compatibility since they are FM. Although comp-FM addressed a primary limitation of complementary signals (i.e., hardware distortion), CSC hinges on the exact reconstruction of autocorrelation terms to suppress sidelobes, from which optimality is broken for Doppler shifted signals. This work introduces a Doppler-generalized comp-FM (DG-comp-FM) framework that extends the cancellation condition to account for the anticipated unambiguous Doppler span after post-summing. While this framework is developed for use within a combine-before-Doppler processing manner, it can likewise be employed to design an entire coherent processing interval (CPI) to minimize range-sidelobe modulation (RSM) within the radar point-spread-function (PSF), thereby introducing the potential for cognitive operation if sufficient scattering knowledge is available a-priori. 

Some radar systems operate with multiple emitters, as in the case of Multiple-input-multiple-output (MIMO) radar. Whereas a single emitter must contend with the self-inflicted autocorrelation sidelobes, MIMO systems must likewise contend with the cross-correlation with coincident (in time and spectrum) emissions from other emitters. As such, the determination of "orthogonal waveforms" comprises a large portion of research within the MIMO space, with a small majority now recognizing that true orthogonality is not possible for band-limited signals (albeit, with the exclusion of TDMA). The notion of complementary-FM is proposed for exploration within a MIMO context, whereby coherently combining responses can achieve CSC as well as cross-correlation cancellation for a wide Doppler space. By effectively minimizing cross-correlation terms, this enables improved channel separation on receive as well as improved estimation capability due to reduced correlation error. Proposal items include further exploration/characterization of the space, incorporating an explicit spectral 


Jigyas Sharma

SEDPD: Sampling-Enhanced Differentially Private Defense against Backdoor Poisoning Attacks of Image Classification

When & Where:


Nichols Hall, Room 246 (Executive Conference Room)

Committee Members:

Han Wang, Chair
Drew Davidson
Dongjie Wang


Abstract

Recent advancements in explainable artificial intelligence (XAI) have brought significant transparency to machine learning by providing interpretable explanations alongside model predictions. However, this transparency has also introduced vulnerabilities, enhancing adversaries’ ability for the model decision processes through explanation-guided attacks. In this paper, we propose a robust, model-agnostic defense framework to mitigate these vulnerabilities by explanations while preserving the utility of XAI. Our framework employs a multinomial sampling approach that perturbs explanation values generated by techniques such as SHAP and LIME. These perturbations ensure differential privacy (DP) bounds, disrupting adversarial attempts to embed malicious triggers while maintaining explanation quality for legitimate users. To validate our defense, we introduce a threat model tailored to image classification tasks. By applying our defense framework, we train models with pixel-sampling strategies that integrate DP guarantees, enhancing robustness against backdoor poisoning attacks with XAI. Extensive experiments on widely used datasets, such as CIFAR-10, MNIST, CIFAR-100 and Imagenette, and models, including ConvMixer and ResNet-50, show that our approach effectively mitigates explanation-guided attacks without compromising the accuracy of the model. We also test our defense performance against other backdoor attacks, which shows our defense framework can detect other type backdoor triggers very well. This work highlights the potential of DP in securing XAI systems and ensures safer deployment of machine learning models in real-world applications.


Dimple Galla

Intelligent Application for Cold Email Generation: Business Outreach

When & Where:


Eaton Hall, Room 2001B

Committee Members:

David Johnson, Chair
Prasad Kulkarni
Dongjie Wang


Abstract

Cold emailing remains an effective strategy for software service companies to improve organizational reach by acquiring clients. Generic emails often fail to get a response.
This project leverages Generative AI to automate the cold email generation. This project is built with the Llama-3.1 model and a Chroma vector database that supports the semantic search of keywords in the job description that matches the project portfolio links of software service companies. The application automatically extracts the technology related job openings for Fortune 500 companies. Users can either select from these extracted job postings or manually enter URL of a job posting, after which the system generates email and sends email upon approval. Advanced techniques like Chain-of-Thought Prompting and Few-Shot Learning were applied to improve the relevance making the email more responsive. This AI driven approach improves engagement and simplifies the business development process for software service companies.


Shahima Kalluvettu Kuzhikkal

Machine Learning Based Predictive Maintenance for Automotive Systems

When & Where:


Eaton Hall, Room 2001B

Committee Members:

David Johnson, Chair
Rachel Jarvis
Prasad Kulkarni
Hongyang Sun

Abstract

Predictive maintenance plays a central role in reducing vehicle downtime and improving operational efficiency by using data-driven methods to classify the condition of automotive engines. Rather than relying on fixed service schedules or reacting to unexpected breakdowns, this approach leverages machine learning to distinguish between healthy and failed engines based on operational data.

In this project, engine telemetry data capturing key parameters such as engine speed, fuel pressure, and coolant temperature was used to train and evaluate several machine learning models, including logistic regression, random forest, k-nearest neighbors, and a neural network. To further enhance predictive performance, ensemble strategies such as soft voting and stacking were applied. The stacking ensemble, which combines the strengths of multiple classifiers through a meta-learning approach, demonstrated particularly effective results.

This classification-based framework demonstrates how data-driven fault detection can enhance automotive maintenance operations. By identifying engine failures more reliably, machine learning enables safer transportation, reduces maintenance costs, and enhances overall vehicle dependability. Beyond individual vehicles, such approaches have broader applications in fleet management, where proactive decision-making can improve service continuity, reduce operational risks, and increase customer satisfaction.


Jennifer Quirk

Aspects of Doppler-Tolerant Radar Waveforms

When & Where:


Nichols Hall, Room 246 (Executive Conference Room)

Committee Members:

Shannon Blunt, Chair
Patrick McCormick
Charles Mohr
James Stiles
Zsolt Talata

Abstract

The Doppler tolerance of a waveform refers to its behavior when subjected to a fast-time Doppler shift imposed by scattering that involves nonnegligible radial velocity. While previous efforts have established decision-based criteria that lead to a binary judgment of Doppler tolerant or intolerant, it is also useful to establish a measure of the degree of Doppler tolerance. The purpose in doing so is to establish a consistent standard, thereby permitting assessment across different parameterizations, as well as introducing a Doppler “quasi-tolerant” trade-space that can ultimately inform automated/cognitive waveform design in increasingly complex and dynamic radio frequency (RF) environments. 

Separately, the application of slow-time coding (STC) to the Doppler-tolerant linear FM (LFM) waveform has been examined for disambiguation of multiple range ambiguities. However, using STC with non-adaptive Doppler processing often results in high Doppler “cross-ambiguity” side lobes that can hinder range disambiguation despite the degree of separability imparted by STC. To enhance this separability, a gradient-based optimization of STC sequences is developed, and a “multi-range” (MR) modification to the reiterative super-resolution (RISR) approach that accounts for the distinct range interval structures from STC is examined. The efficacy of these approaches is demonstrated using open-air measurements. 

The proposed work to appear in the final dissertation focuses on the connection between Doppler tolerance and STC. The first proposal includes the development of a gradient-based optimization procedure to generate Doppler quasi-tolerant random FM (RFM) waveforms. Other proposals consider limitations of STC, particularly when processed with MR-RISR. The final proposal introduces an “intrapulse” modification of the STC/LFM structure to achieve enhanced sup pression of range-folded scattering in certain delay/Doppler regions while retaining a degree of Doppler tolerance.