Defense Notices
All students and faculty are welcome to attend the final defense of EECS graduate students completing their M.S. or Ph.D. degrees. Defense notices for M.S./Ph.D. presentations for this year and several previous years are listed below in reverse chronological order.
Students who are nearing the completion of their M.S./Ph.D. research should schedule their final defenses through the EECS graduate office at least THREE WEEKS PRIOR to their presentation date so that there is time to complete the degree requirements check, and post the presentation announcement online.
Upcoming Defense Notices
David Felton
Optimization and Evaluation of Physical Complementary Radar WaveformsWhen & Where:
Nichols Hall, Room 129 (Apollo Auditorium)
Committee Members:
Shannon Blunt, ChairRachel Jarvis
Patrick McCormick
James Stiles
Zsolt Talata
Abstract
**Currently under security review**
Hao Xuan
Toward an Integrated Computational Framework for Metagenomics: From Sequence Alignment to Automated Knowledge DiscoveryWhen & Where:
Nichols Hall, Room 246 (Executive Conference Room)
Committee Members:
Cuncong Zhong, ChairFengjun Li
Suzanne Shontz
Hongyang Sun
Liang Xu
Abstract
Metagenomic sequencing has become a central paradigm for studying complex microbial communities and their interactions with the host, with emerging applications in clinical prediction and disease modeling. In this work, we first investigate two representative application scenarios: predicting immune checkpoint inhibitor response in non-small cell lung cancer using gut microbial signatures, and characterizing host–microbiome interactions in neonatal systems. The proposed reference-free neural network captures both compositional and functional signals without reliance on reference genomes, while the neonatal study demonstrates how environmental and genetic factors reshape microbial communities and how probiotic intervention can mitigate pathogen-induced immune activation.
These studies highlight both the promise and the inherent difficulty of metagenomic analysis: transforming raw sequencing data into clinically actionable insights remains an algorithmically fragmented and computationally intensive process. This challenge arises from two key limitations: the lack of a unified algorithmic foundation for sequence alignment and the absence of systematic approaches for selecting and organizing analytical tools. Motivated by these challenges, we present a unified computational framework for metagenomic analysis that integrates complementary algorithmic and systems-level solutions.
First, to resolve fragmentation at the alignment level, we develop the Versatile Alignment Toolkit (VAT), a unified algorithmic system for biological sequence alignment across diverse applications. VAT introduces an asymmetric multi-view k-mer indexing scheme that integrates multiple seeding strategies within a single architecture and enables dynamic seed-length adjustment via longest common prefix (LCP)–based inference without re-indexing. A flexible seed-chaining mechanism further supports diverse alignment scenarios, including collinear, rearranged, and split alignments. Combined with a hardware-efficient in-register bitonic sorting algorithm and dynamic index-loading strategy, VAT achieves high efficiency and broad applicability across read mapping, homology search, and whole-genome alignment. Second, to address the challenge of tool selection and pipeline construction, we develop SNAIL, a natural language processing system for automated recognition of bioinformatics tools from large-scale and rapidly growing scientific literature. By integrating XGBoost and Transformer-based models such as SciBERT, SNAIL enables structured extraction of analytical tools and supports automated, reproducible pipeline construction.
Together, this work establishes a unified framework that is grounded in real-world applications and addresses key bottlenecks in metagenomic analysis, enabling more efficient, scalable, and clinically actionable workflows.
Pramil Paudel
Learning Without Seeing: Privacy-Preserving and Adversarial Perspectives in Lensless ImagingWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
Fengjun Li, ChairAlex Bardas
Bo Luo
Cuncong Zhong
Haiyang Chao
Abstract
Conventional computer vision relies on spatially resolved, human-interpretable images, which inherently expose sensitive information and raise privacy concerns. In this study, we explore an alternative paradigm based on lensless imaging, where scenes are captured as diffraction patterns governed by the point spread function (PSF). Although unintelligible to humans, these measurements encode structured, distributed information that remains useful for computational inference.
We propose a unified framework for privacy-preserving vision that operates directly on lensless sensor measurements by leveraging their frequency-domain and phase-encoded properties. The framework is developed along two complementary directions. First, we enable reconstruction-free inference by exploiting the intrinsic obfuscation of lensless data. We show that semantic tasks such as classification can be performed directly on diffraction patterns using models tailored to non-local, phase-scrambled representations. We further design lensless-aware architectures and integrate them into practical pipelines, including a Swin Transformer-based steganographic framework (DiffHide) for secure and imperceptible information embedding. To assess robustness, we formalize adversarial threat models and develop defenses against learning-based reconstruction attacks, particularly GAN-driven inversion. Second, we investigate the limits of privacy by studying the reconstructability of lensless measurements without explicit knowledge of the forward model. We develop learning-based reconstruction methods that approximate the inverse mapping and analyze conditions under which sensitive information can be recovered. Our results demonstrate that lensless measurements enable effective vision tasks without reconstruction, while providing a principled framework to evaluate and mitigate privacy risks.
Sharmila Raisa
Digital Coherent Optical System: Investigation and MonitoringWhen & Where:
Nichols Hall, Room 246 (Executive Conference Room)
Committee Members:
Rongqing Hui, ChairMorteza Hashemi
Erik Perrins
Alessandro Salandrino
Jie Han
Abstract
Coherent wavelength-division multiplexed (WDM) optical fiber systems have become the primary transmission technology for high-capacity data networks, driven by the explosive bandwidth demand of cloud computing, streaming services, and large-scale artificial intelligence training infrastructure. This dissertation investigates two fundamental aspects of digital coherent fiber optic systems under the unifying theme of source and monitoring: the design of multi-wavelength optical sources compatible with high-order coherent detection, and the leveraging of fiber Kerr-effect nonlinearity at the coherent receiver to perform physical-layer link health monitoring and to assess inherent security vulnerabilities — both achieved through digital signal processing of the received complex optical field without dedicated hardware.
We begin by addressing the multi-wavelength transmitter challenge in WDM coherent systems. Existing quantum-dot, quantum-dash, and quantum-well based optical frequency comb (OFC) sources share a common limitation: individual comb line linewidths in the tens of MHz range caused by low output power levels of 1–20 mW, making them incompatible with high-order coherent detection. We demonstrate coherent system application of a single-section InGaAsP QW Fabry-Perot laser diode with greater than 120 mW optical power at the fiber pigtail and 36.14 GHz mode spacing. The high optical power per mode produces Lorentzian equivalent linewidths below 100 kHz — compatible with 16-QAM carrier phase recovery without optical phase locking. Experimental results obtained using a commercial Ciena WaveLogic-Ai coherent transceiver demonstrate 20-channel WDM transmission over 78.3 km of standard single-mode fiber with all channels below the HD-FEC threshold of 3.8 × 10⁻³ at 30 GBaud differential-coded 16-QAM, corresponding to an aggregate capacity of 2.15 Tb/s from a single laser device.
After investigating the QW Fabry-Perot laser as a multi-wavelength source for coherent WDM transmission, we leverage the coherent receiver DSP to exploit fiber Kerr-effect nonlinearity for longitudinal power profile estimation, enabling reconstruction of the signal power distribution P(z) along the full multi-span link without dedicated hardware or traffic interruption. We propose a modified enhanced regular perturbation (ERP) method that corrects two independent physical error sources of the standard RP1 least-squares baseline: the accumulated nonlinear phase rotation, and the dispersion-mediated phase-to-intensity conversion — a second bias source not addressed by prior methods. The RP1 method produces mean absolute error (MAE) that scales quadratically with span count, growing to 1.656 dB at 10 spans and 3 dBm. The modified ERP reduces this to 0.608 dB — an improvement that grows consistently with link length, confirming increasing advantage in the long-haul regime. Extension to WDM through an XPM-aware per-channel formulation achieves MAE of 0.113–0.419 dB across 150–500 km link lengths.
In addition to its role in enabling DSP-based longitudinal power profile estimation, the fiber Kerr-effect nonlinearity is shown to give rise to an inherent physical-layer security vulnerability in coherent WDM systems. We show that an eavesdropper co-tenanting a shared fiber — transmitting a continuous-wave probe at a wavelength adjacent to the legitimate signal — can capture the XPM-induced waveform at the fiber output and apply a bidirectional gated recurrent unit neural network, trained on split-step Fourier method simulation data, to reconstruct the transmitted symbol sequence without physical fiber access and without perturbing the legitimate signal. This eavesdropping mechanism is experimentally validated using a commercial Ciena WaveLogic-Ai coherent transceiver for ASK, BPSK, QPSK, and 16-QAM modulation formats at 4.26 GBaud and 8.56 GBaud over one- and two-span 75 km fiber systems, achieving zero symbol errors under high-OSNR conditions. Noise-aware training over OSNR from 20 to 60 dB maintains symbol error rate below 10⁻² for OSNR above 25–30 dB.
Together, these three contributions demonstrate that the coherent fiber optic system is a versatile physical instrument extending well beyond its role as a data transmission medium. The coherent receiver infrastructure — deployed for high-order modulation and data recovery — simultaneously enables the high-power OFC laser to serve as a practical multi-wavelength transmitter source, and provides the complex field measurement capability through which fiber Kerr-effect nonlinearity can be exploited constructively for distributed link monitoring and, as a direct consequence, reveals an inherent physical-layer security exposure in shared fiber infrastructure. This unified perspective on the coherent system as both a transmission platform and a general-purpose measurement instrument has direct relevance to the design of spectrally efficient, self-monitoring, and physically secure optical interconnects for next-generation AI computing networks.
Arman Ghasemi
Task-Oriented Data Communication and Compression for Timely Forecasting and Control in Smart GridsWhen & Where:
Nichols Hall, Room 246 (Executive Conference Room)
Committee Members:
Morteza Hashemi, ChairAlexandru Bardas
Prasad Kulkarni
Taejoon Kim
Zsolt Talata
Abstract
Advances in sensing, communication, and intelligent control have transformed power systems into data-driven smart grids, where forecasting and intelligent decision-making are essential components. Modern smart grids include distributed energy resources (DERs), renewable generation, battery energy storage systems, and large numbers of grid-edge devices that continuously generate time-series data. At the same time, increasing renewable penetration introduces substantial uncertainty in generation, net load, and market operations, while communication networks impose bandwidth, latency, and reliability constraints on timely data delivery. This dissertation addresses how time-series forecasting, data compression, and task-oriented wireless communication can be jointly designed for smart grid applications.
First, we study weather-aware distributed energy management in prosumer-centric microgrids and show that incorporating day-ahead weather information into decision-making improves battery dispatch and reduces the impact of renewable uncertainty. Second, we introduce forecasting-aware energy management in both wholesale and retail electricity markets, highlighting how renewable generation forecasting affects pricing, scheduling, and uncertainty mitigation. Third, we develop and evaluate deep learning methods for renewable generation forecasting, showing that Transformer-based models outperform recurrent baselines such as RNN and LSTM for wind and solar prediction tasks.
Building on this forecasting foundation, we develop a communication-efficient forecasting framework in which high-dimensional smart grid measurements are compressed into low-dimensional latent representations before transmission. This framework is extended into a task-oriented communication system that jointly optimizes data relevance and information timeliness, so that the receiver obtains compressed updates that remain useful for downstream forecasting tasks. Finally, we extend this framework to a distributed multi-node uplink setting, where multiple grid sensors share a bandwidth-limited channel, and develop scheduling policy that improves both the timeliness and task-relevance of received updates.
Pardaz Banu Mohammad
Towards Early Detection of Alzheimer’s Disease based on Speech using Reinforcement Learning Feature SelectionWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
Arvin Agah, ChairDavid Johnson
Sumaiya Shomaji
Dongjie Wang
Sara Wilson
Abstract
Alzheimer’s Disease (AD) is a progressive, irreversible neurodegenerative disorder and the leading cause of dementia worldwide, affecting an estimated 55 million people globally. The window of opportunity for intervention is demonstrably narrow, making reliable early-stage detection a clinical and scientific imperative. While current diagnostic techniques such as neuroimaging and cerebrospinal fluid (CSF) biomarkers carry well-defined limitations in scalability, cost, and access equity, speech has emerged as a compelling non-invasive proxy for cognitive function evaluation.
This work presents a novel approach for using acoustic feature selection as a decision-making technique and implements it using deep reinforcement learning. Specifically, we use a Deep-Q-Network (DQN) agent to navigate a high dimensional feature space of over 6,000 acoustic features extracted using the openSMILE toolkit, dynamically constructing maximally discriminative and non-redundant features subsets. In order to capture the latent structural dependencies among
acoustic features which classifier and wrapper methods have difficulty to model, we introduce the Graph Convolutional Network (GCN) based correlation awareness feature representation layer that operates as an auxiliary input to the DQN state encoder. Post selection interpretability is reinforced through TF-IDF weighting and K-means clustering which together yield both feature level and cluster level explanations that are clinically actionable. The framework is evaluated across five classifiers, namely, support vector machines (SVM), logistic regression, XGBoost, random forest, and feedforward neural network. We use 10-fold stratified cross-validation on established benchmarks of datasets, including DementiaBank Pitt Corpus, Ivanova, and ADReSS challenge data. The proposed approach is benchmarked against state-of-the-art feature selection methods such as LASSO, Recursive feature selection, and mutual information selectors. This research contributes to three primary intellectual advances: (1) a graph augmented state representation that encodes inter-feature relational structure within a reinforcement learning agent, (2) a clinically interpretable pipeline that bridges the gap between algorithmic performance and translational utility, and (3) multilingual data approach for the reinforcement learning agent framework. This study has direct implications for equitable, low-cost and scalable AD screening in both clinical and community settings.
Zhou Ni
Bridging Federated Learning and Wireless Networks: From Adaptive Learning to FLdriven System OptimizationWhen & Where:
Nichols Hall, Room 246 (Executive Conference Room)
Committee Members:
Morteza Hashemi, ChairFengjun Li
Van Ly Nguyen
Han Wang
Shawn Keshmiri
Abstract
Federated learning (FL) has emerged as a promising distributed machine learning
framework that enables multiple devices to collaboratively train models without sharing raw
data, thereby preserving privacy and reducing the need for centralized data collection. However,
deploying FL in practical wireless environments introduces two major challenges. First, the data
generated across distributed devices are often heterogeneous and non-IID, which makes a single
global model insufficient for many users. Second, learning performance in wireless systems is
strongly affected by communication constraints such as interference, unreliable channels, and
dynamic resource availability. This PhD research aims to address these challenges by bridging
FL methods and wireless networks.
In the first thrust, we develop personalized and adaptive FL methods given the underlying
wireless link conditions. To this end, we propose channel-aware neighbor selection and
similarity-aware aggregation in wireless device-to-device (D2D) learning environments. We
further investigate the impacts of partial model update reception on FL performance. The
overarching goal of the first thrust is to enhance FL performance under wireless constraints.
Next, we investigate the opposite direction and raise the question: How can FL-based distributed
optimization be used for the design of next-generation wireless systems? To this end, we
investigate communication-aware participation optimization in vehicular networks, where
wireless resource allocation affects the number of clients that can successfully contribute to FL.
We further extend this direction to integrated sensing and communication (ISAC) systems,
where personalized FL (PFL) is used to support distributed beamforming optimization with joint
sensing and communication objectives.
Overall, this research establishes a unified framework for bridging FL and wireless networks. As
a future direction, this work will be extended to more realistic ISAC settings with dynamic
spectrum access, where communication, sensing, scheduling, and learning performance must be
considered jointly.
Arnab Mukherjee
Attention-Based Solutions for Occlusion Challenges in Person TrackingWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
Prasad Kulkarni, ChairSumaiya Shomaji
Hongyang Sun
Jian Li
Abstract
Person re-identification (Re-ID) and multi-object tracking in unconstrained surveillance environments pose significant challenges within the field of computer vision. These complexities stem mainly from occlusion, variability in appearance, and identity switching across various camera views. This research outlines a comprehensive and innovative agenda aimed at tackling these issues, employing a series of increasingly advanced deep learning architectures, culminating in a groundbreaking occlusion-aware Vision Transformer framework.
At the heart of this work is the introduction of Deep SORT with Multiple Inputs (Deep SORT-MI), a cutting-edge real-time Re-ID system featuring a dual-metric association strategy. This strategy adeptly combines Mahalanobis distance for motion-based tracking with cosine similarity for appearance-based re-identification. As a result, this method significantly decreases identity switching compared to the baseline SORT algorithm on the MOT-16 benchmark, thereby establishing a robust foundation for metric learning in subsequent research.
Expanding on this foundation, a novel pose-estimation framework integrates 2D skeletal keypoint features extracted via OpenPose directly into the association pipeline. By capturing the spatial relationships among body joints along with appearance features, this system enhances robustness against posture variations and partial occlusion. Consequently, it achieves substantial reductions in false positives and identity switches compared to earlier methods, showcasing its practical viability.
Furthermore, a Diverse Detector Integration (DDI) study meticulously assessed the influence of detector choices—including YOLO v4, Faster R-CNN, MobileNet SSD v2, and Deep SORT—on the efficacy of metric learning-based tracking. The results reveal that YOLO v4 consistently delivers exceptional tracking accuracy on both the MOT-16 and MOT-17 datasets, establishing its superiority in this competitive landscape.
In conclusion, this body of research notably advances occlusion-aware person Re-ID by illustrating a clear progression from metric learning to pose-guided feature extraction and ultimately to transformer-based global attention modeling. The findings underscore that lightweight, meticulously parameterized Vision Transformers can achieve impressive generalization for occlusion detection, even under constrained data scenarios. This opens up exciting prospects for integrated detection, localization, and re-identification in real-world surveillance systems, promising to enhance their effectiveness and reliability.
Sai Katari
Android Malware Detection SystemWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
David Johnson, ChairArvin Agah
Prasad Kulkarni
Abstract
Android malware remains a significant threat to mobile security, requiring efficient and scalable detection methods. This project presents an Android Malware Detection System that uses machine learning to classify applications as benign or malicious based on static permission-based analysis. The system is trained on the TUANDROMD dataset of 4,464 applications using four models-Logistic Regression, XGBoost, Random Forest, and Naive Bayes-with a 75/25 train/test split and 5-fold cross-validation on the training set for evaluation. To improve reliability, the system incorporates a hybrid decision approach that combines machine learning confidence scores with a rule-based static analysis engine, using a three-zone confidence routing mechanism to capture threats that ML alone may miss. The solution is deployed as a Flask web application with both a manual detection interface and an APK file scanner, providing predictions, confidence scores, and risk insights, ultimately supporting more informed and secure decision-making.
Ertewaa Saud Alsahayan
Toward Reliable LLM-Assisted Design Space Exploration under Performance, Cost, and Dependability ConstraintsWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
Tamzidul Hoque, ChairPrasad Kulkarni
Sumaiya Shomaji
Hongyang Sun
Huijeong Kim
Abstract
Architectural design space exploration (DSE) requires navigating large configuration spaces while satisfying multiple conflicting objectives, including performance, cost, and system dependability. Large language models (LLMs) have shown promise in assisting DSE by proposing candidate designs and interpreting simulation feedback. However, extending LLM-based DSE to realistic multi-objective settings introduces structural challenges. A naive multi-objective extension of prior LLM-based DSE approaches, which we term Co-Pilot2, exhibits reasoning instability, candidate degeneration, feasibility violations, and lack of progressive improvement. These limitations arise not from insufficient model capacity, but from the absence of structured control, verification, and decision integrity within the exploration process.
To address these challenges, this research introduces REMODEL, a structured LLM-controlled DSE framework that transforms free-form reasoning into a constrained, verifiable, and iterative optimization process. REMODEL incorporates candidate pooling across parallel reasoning instances, strict state isolation via history snapshotting, deterministic feasibility verification, canonical design representation and deduplication, explicit decision stages, and structured reasoning to enforce complete parameter coverage and consistent trend analysis. These mechanisms enable reliable and stable exploration under complex multi-objective constraints.
To support dependability-aware evaluation, the framework is integrated with cycle-accurate simulation using gem5 and its reliability-focused extension GemV, enabling detailed analysis of performance, power, and fault tolerance through vulnerability metrics. This integration allows the system to reason not only about performance–cost trade-offs, but also about reliability-aware design decisions under realistic execution conditions.
Experimental evaluation demonstrates that REMODEL identifies near-optimal designs within a small number of simulations, achieving significantly higher solution quality per simulation compared to baseline methods such as random search and genetic algorithms, while maintaining low computational overhead.
This work establishes a foundation for dependable LLM-assisted DSE by incorporating reliability constraints into the exploration loop. As a future direction, this framework will be extended to incorporate security-aware design considerations, enabling unified reasoning over performance, cost, reliability, and system security.
Bretton Scarbrough
Structured Light for Particle Manipulation: Hologram Generation and Optical Binding SimulationWhen & Where:
Nichols Hall, Room 246 (Executive Conference Room)
Committee Members:
Shima Fardad, ChairRongqing Hui
Alessandro Salandrino
Abstract
This thesis addresses two related problems in the optical manipulation of microscopic particles: the efficient generation of holograms for holographic optical tweezers and the simulation of multi-particle optical binding. Holographic optical tweezers use phase-only spatial light modulators to create programmable optical trapping fields, enabling dynamic control over the number, position, and relative strength of optical traps. Because the quality of the trapping field depends strongly on the computed hologram, the first part of this work focuses on improving hologram-generation methods used in these systems.
A new phase-induced compressive sensing algorithm is presented for holographic optical tweezers, along with weighted and unweighted variants. These methods are developed from the Gerchberg-Saxton framework and are designed to improve computational efficiency while preserving favorable trapping characteristics such as uniformity and optical efficiency. By combining compressive sensing with phase induction, the proposed algorithms reduce the computational burden associated with iterative hologram generation while maintaining strong performance across a variety of trapping arrangements. Comparative simulations are used to evaluate these methods against several established hologram-generation algorithms, and the results show that the proposed approaches offer meaningful improvements in convergence behavior and overall performance.
The second part of this thesis examines optical binding, a phenomenon in which multiple particles interact through both the incident optical field and the fields scattered by neighboring particles. To study this process, a numerical simulation is developed that incorporates gradient forces, radiation pressure, and light-mediated particle-particle interactions in both two- and three-dimensional configurations. The simulation is used to investigate how particles evolve under different initial conditions and illumination states, and how collective effects influence the formation of stable or semi-stable arrangements. These results provide insight into the role of scattering-mediated forces in many-particle optical systems and highlight differences between two-dimensional and three-dimensional behavior.
Although hologram generation and optical binding are treated as separate problems in this work, they are connected by a common goal: understanding how structured optical fields can be designed and applied to control microscopic matter. Together, the results of this thesis contribute to the broader study of computational beam shaping and many-body optical interactions, with relevance to advanced optical trapping, particle organization, and dynamically reconfigurable light-driven systems.
Sai Rithvik Gundla
Beyond Regression Accuracy: Evaluating Runtime Prediction for Scheduling Input Sensitive WorkloadsWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
Hongyang Sun, ChairArvin Agah
David Johnson
Abstract
Runtime estimation plays a structural role in reservation-based scheduling for High Performance Computing (HPC) systems, where predicted walltimes directly influence reservation timing, backfilling feasibility, and overall queue dynamics. This raises a fundamental question of whether improved runtime prediction accuracy necessarily translates into improved scheduling performance. In this work, we conduct an empirical study of runtime estimation under EASY Backfilling using an application-driven workload consisting of MRI-based brain segmentation jobs. Despite identical configurations and uniform metadata, runtimes exhibit substantial variability driven by intrinsic input structure. To capture this variability, we develop a feature-driven machine learning (ML) framework that extracts region-wise features from MRI volumes to predict job runtimes without relying on historical execution traces or scheduling metadata. We integrate these ML-derived predictions into an EASY Backfilling scheduler implemented in the Batsim simulation framework. Our results show that regression accuracy alone does not determine scheduling performance. Instead, scheduling performance depends strongly on estimation bias and its effect on reservation timing and runtime exceedances. In particular, mild multiplicative calibration of ML-based runtime estimates stabilizes scheduler behavior and yields consistently competitive performance across workload and system configurations. Comparable performance can also be observed with certain levels of uniform overestimation; however, calibrated ML predictions provide a systematic mechanism to control estimation bias without relying on arbitrary static inflation. In contrast, underestimation consistently leads to severe performance degradation and cascading job terminations. These findings highlight runtime estimation as a structural control input in backfilling-based HPC scheduling and demonstrate the importance of evaluating prediction models jointly with scheduling dynamics rather than through regression metrics alone.
Pavan Sai Reddy Pendry
BabyJay - A RAG Based Chatbot for the University of KansasWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
David Johnson, ChairRachel Jarvis
Prasad Kulkarni
Abstract
The University of Kansas maintains hundreds of departmental and unit websites, leaving students without a unified way to find information. General-purpose chatbots hallucinate KU-specific facts, and static FAQ pages cannot hold a conversation. This work presents BabyJay, a Retrieval-Augmented Generation chatbot that answers student questions using content scraped from official KU sources, with inline citations on every response. The pipeline combines query preprocessing and decomposition, an intent classifier that routes most queries to fast JSON lookups, hybrid retrieval (BM25 and ChromaDB vector search merged via Reciprocal Rank Fusion), a cross-encoder re-ranker, and generation by Claude Sonnet 4.6 under a context-only system prompt. Evaluation on 46 question-answer pairs across five difficulty tiers and eight domains produced a composite score of 0.72, entity precision of 93%, and zero runtime errors. Retrieval, rather than generation, emerged as the primary bottleneck, motivating future work on multi-domain query handling.
Ye Wang
Toward Practical and Stealthy Sensor Exploitation: Physical, Contextual, and Control-Plane Attack ParadigmsWhen & Where:
Nichols Hall, Room 250 (Gemini Conference Room)
Committee Members:
Fengjun Li, ChairDrew Davidson
Rongqing Hui
Bo Luo
Haiyang Chao
Abstract
Modern intelligent systems increasingly rely on continuous sensor data streams for perception, decision-making, and control, making sensors a critical yet underexplored attack surface. While prior research has demonstrated the feasibility of sensor-based attacks, recent advances in mobile operating systems and machine learning-based defenses have significantly reduced their practicality, rendering them more detectable, resource-intensive, and constrained by evolving permission and context-aware security models.
This dissertation revisits sensor exploitation under these modern constraints and develops a unified, cross-layer perspective that improves both practicality and stealth of sensor-enabled attacks. We identify three fundamental challenges: (i) the difficulty of reliably manipulating physical sensor signals in noisy, real-world environments; (ii) the effectiveness of context-aware defenses in detecting anomalous sensor behavior on mobile devices, and (iii) the lack of lightweight coordination for practical sensor-based side- and covert-channels.
To address the first challenge, we propose a physical-domain attack framework that integrates signal modeling, simulation-guided attack synthesis, and real-time adaptive targeting, enabling robust adversarial perturbations with high attack success rates even under environmental uncertainty. As a case study, we demonstrate an infrared laser-based adversarial example attack against face recognition systems, which achieves consistently high success rates across diverse conditions with practical execution overhead.
To improve attack stealth against context-aware defenses, we introduce an auto-contextualization mechanism that synchronizes malicious sensor actuation with legitimate application activity. By aligning injected signals with both statistical patterns and semantic context of benign behavior, the approach renders attacks indistinguishable from normal system operations and benign sensor usage. We validate this design using three Android logic bombs, showing that auto-contextualized triggers can evade both rule-based and learning-based detection mechanisms.
Finally, we extend sensor exploitation beyond the traditional attack-channel plane by introducing a lightweight control-plane protocol embedded within sensor data streams. This protocol encodes control signals directly into sensor observations and leverages simple signal-processing primitives to coordinate multi-stage attacks without relying on privileged APls or explicit inter-process communication. The resulting design enables low-overhead, stealthy coordination of cross-device side- and covert-channels.
Together, these contributions establish a new paradigm for sensor exploitation that spans physical, contextual, and control-plane dimensions. By bridging these layers, this dissertation demonstrates that sensor-based attacks remain not only feasible but also practical and stealthy in modern computer systems.
Jamison Bond
Mutual Coupling Array Calibration Utilizing Decomposition of Modeled Scattering MatrixWhen & Where:
Nichols Hall, Room 250 (Gemini Conference Room)
Committee Members:
Patrick McCormick, ChairShannon Blunt
Carl Leuschen
Abstract
Modern phased-array antenna calibration is essential for advanced radar systems to achieve precise beamforming, sidelobe control, and coherent processing. While mutual coupling-based calibration provides a valuable internal alternative to external far-field references by exploiting near-field element interactions, the problem is fundamentally ill-posed. Measured responses depend simultaneously on transmit coefficients, receive coefficients, and the coupling matrix, making it difficult to isolate true channel errors from array-model mismatch without additional structure.
This thesis presents a Bayesian Maximum A Posteriori (MAP) calibration framework that resolves this ambiguity by embedding physically motivated prior information into the estimation problem. The nominal coupling matrix is decomposed into Infinite, Symmetric, and Reciprocal components, which define low-dimensional parameterizations and prior covariance models. A Maximum Likelihood (ML) stage first generates a data-consistent transceiver initialization, followed by a MAP estimator that refines the solution by jointly addressing structured coupling deviations and measurement uncertainty.
Evaluations using Computational Electromagnetic (CEM) models and measured WaDES array data reveal that the physical array contains more higher-order structural content than the nominal CEM model. Across Monte Carlo trials, highly structured MAP estimators generally achieve lower aggregate error than unconstrained ML and Log Least Squares (LLS) methods. The overlapping-subspace M family offers an optimal balance of structural flexibility, zero-centered phase and magnitude behavior, and tuning robustness. Additionally, parametric sweeps highlight that prior covariance scaling is a critical design parameter: tight reciprocal priors prevent spurious structural absorption, whereas overly loose priors allow model mismatch to contaminate transceiver estimates.
Ultimately, this work demonstrates that internal mutual coupling calibration can achieve autonomy and robustness against model mismatch by parameterizing the nominal coupling matrix into structured components and integrating them as Bayesian priors.
Kevin Likcani
Use of Machine Learning to Predict Drug Court SuccessWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
David Johnson, ChairPrasad Kulkarni
Heechul Yun
Abstract
Substance use remains a major public health issue in the United States that significantly impacts individuals, families, and society. Many individuals who suffer from substance use disorder (SUD) face incarceration due to drug-related offenses. Drug courts have emerged as an alternative to imprisonment and offer the opportunity for individuals to participate in a drug rehabilitation program instead. Drug courts mainly focus on those with non-violent drug-related offenses. One of the challenges of decision making in drug courts is assessing the likelihood of participants graduating from the drug court and avoiding recidivism after graduation. This study investigates the use of machine learning models to predict success in drug courts using data from a substance use drug court in Missouri. Success is measured in terms of graduation from the program, and the model includes a wide range of potential predictors including demographic characteristics, family and social factors, substance use history, legal involvement, physical and mental health history, employment history as well as drug court participation data. The results will be beneficial to drug court teams and presiding judges in predicting client success, evaluating risk factors during treatment for participants, informing person-centered treatment planning, and the development of after-care plans for high-risk participants to reduce the likelihood of recidivism.
Past Defense Notices
Jagadeesh Sai Dokku
Intelligent Chat Bot for KU Website: Automated Query Response and Resource NavigationWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
David Johnson, ChairPrasad Kulkarni
Hongyang Sun
Abstract
This project introduces an intelligent chatbot designed to improve user experience on our university website by providing instant, automated responses to common inquiries. Navigating a university website can be challenging for students, applicants, and visitors who seek quick information about admissions, campus services, events, and more. To address this challenge, we developed a chatbot that simulates human conversation using Natural Language Processing (NLP), allowing users to find information more efficiently. The chatbot is powered by a Bidirectional Long Short-Term Memory (BiLSTM) model, an architecture well-suited for understanding complex sentence structures. This model captures contextual information from both directions in a sentence, enabling it to identify user intent with high accuracy. We trained the chatbot on a dataset of intent-labeled queries, enabling it to recognize specific intentions such as asking about campus facilities, academic programs, or event schedules. The NLP pipeline includes steps like tokenization, lemmatization, and vectorization. Tokenization and lemmatization prepare the text by breaking it into manageable units and standardizing word forms, making it easier for the model to recognize similar word patterns. The vectorization process then translates this processed text into numerical data that the model can interpret. Flask is used to manage the backend, allowing seamless communication between the user interface and the BiLSTM model. When a user submits a query, Flask routes the input to the model, processes the prediction, and delivers the appropriate response back to the user interface. This chatbot demonstrates a successful application of NLP in creating interactive, efficient, and user-friendly solutions. By automating responses, it reduces reliance on manual support and ensures users can access relevant information at any time. This project highlights how intelligent chatbots can transform the way users interact with university websites, offering a faster and more engaging experience.
Anahita Memar
Optimizing Protein Particle Classification: A Study on Smoothing Techniques and Model PerformanceWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
Prasad Kulkarni, ChairHossein Saiedian
Prajna Dhar
Abstract
This thesis investigates the impact of smoothing techniques on enhancing classification accuracy in protein particle datasets, focusing on both binary and multi-class configurations across three datasets. By applying methods including Averaging-Based Smoothing, Moving Average, Exponential Smoothing, Savitzky-Golay, and Kalman Smoothing, we sought to improve performance in Random Forest, Decision Tree, and Neural Network models. Initial baseline accuracies revealed the complexity of multi-class separability, while clustering analyses provided valuable insights into class similarities and distinctions, guiding our interpretation of classification challenges.
These results indicate that Averaging-Based Smoothing and Moving Average techniques are particularly effective in enhancing classification accuracy, especially in configurations with marked differences in surfactant conditions. Feature importance analysis identified critical metrics, such as IntMean and IntMax, which played a significant role in distinguishing classes. Cross-validation validated the robustness of our models, with Random Forest and Neural Network consistently outperforming others in binary tasks and showing promising adaptability in multi-class classification. This study not only highlights the efficacy of smoothing techniques for improving classification in protein particle analysis but also offers a foundational approach for future research in biopharmaceutical data processing and analysis.
Yousif Dafalla
Web-Armour: Mitigating Reconnaissance and Vulnerability Scanning with Injecting Scan-Impeding Delays in Web DeploymentsWhen & Where:
Nichols Hall, Room 246 (Executive Conference Room)
Committee Members:
Alex Bardas, ChairDrew Davidson
Fengjun Li
Bo Luo
ZJ Wang
Abstract
Scanning hosts on the internet for vulnerable devices and services is a key step in numerous cyberattacks. Previous work has shown that scanning is a widespread phenomenon on the internet and commonly targets web application/server deployments. Given that automated scanning is a crucial step in many cyberattacks, it would be beneficial to make it more difficult for adversaries to perform such activity.
In this work, we propose Web-Armour, a mitigation approach to adversarial reconnaissance and vulnerability scanning of web deployments. The proposed approach relies on injecting scanning impeding delays to infrequently or rarely used portions of a web deployment. Web-Armour has two goals: First, increase the cost for attackers to perform automated reconnaissance and vulnerability scanning; Second, introduce minimal to negligible performance overhead to benign users of the deployment. We evaluate Web-Armour on live environments, operated by real users, and on different controlled (offline) scenarios. We show that Web-Armour can effectively lead to thwarting reconnaissance and internet-wide scanning.
Kabir Panahi
A Security Analysis of the Integration of Biometric Technology in the 2019 Afghan Presidential ElectionWhen & Where:
Nichols Hall, Room 250 (Gemini Room)
Committee Members:
Alex Bardas, ChairDrew Davidson
Fengjun Li
Bo Luo
Abstract
Afghanistan deployed Biometric Voter Verification (BVV) technology nationally for the first time in the 2019 presidential election to address the systematic frauds in the prior elections. Through semi-structure interviews with 18 key national and international stakeholders who had an active role in this election, this study investigates the gap between intended outcomes of the BVV technology—focused on voter enfranchisement, fraud prevention, and public trust—and the reality on election day and beyond within the unique socio-political and technical landscape of Afghanistan.
Our findings reveal that while BVV technology initially promised a secure and transparent election, various technical and implementation challenges emerged, including threats for voters, staff, and officials. We found that the BVVs both supported and violated electoral goals: while they helped reduce fraud, they inadvertently disenfranchised some voters and caused delays that affected public trust. Technical limitations, usability issues, and administrative misalignments contributed to these outcomes. This study recommends critical lessons for future implementations of electoral technologies, emphasizing the importance of context-aware technological solutions and the need for robust administrative and technical frameworks to fully realize the potential benefits of election technology in fragile democracies.
Hara Madhav Talasila
Radiometric Calibration of Radar Depth Sounder Data ProductsWhen & Where:
Nichols Hall, Room 317 (Richard K. Moore Conference Room)
Committee Members:
Carl Leuschen, ChairChristopher Allen
James Stiles
Jilu Li
Leigh Stearns
Abstract
Although the Center for Remote Sensing of Ice Sheets (CReSIS) performs several radar calibration steps to produce Operation IceBridge (OIB) radar depth sounder data products, these datasets are not radiometrically calibrated and the swath array processing uses ideal (rather than measured [calibrated]) steering vectors. Any errors in the steering vectors, which describe the response of the radar as a function of arrival angle, will lead to errors in positioning and backscatter that subsequently affect estimates of basal conditions, ice thickness, and radar attenuation. Scientific applications that estimate physical characteristics of surface and subsurface targets from the backscatter are limited with the current data because it is not absolutely calibrated. Moreover, changes in instrument hardware and processing methods for OIB over the last decade affect the quality of inter-seasonal comparisons. Recent methods which interpret basal conditions and calculate radar attenuation using CReSIS OIB 2D radar depth sounder echograms are forced to use relative scattering power, rather than absolute methods.
As an active target calibration is not possible for past field seasons, a method that uses natural targets will be developed. Unsaturated natural target returns from smooth sea-ice leads or lakes are imaged in many datasets and have known scattering responses. The proposed method forms a system of linear equations with the recorded scattering signatures from these known targets, scattering signatures from crossing flight paths, and the radiometric correction terms. A least squares solution to optimize the radiometric correction terms is calculated, which minimizes the error function representing the mismatch in expected and measured scattering. The new correction terms will be used to correct the remaining mission data. The radar depth sounder data from all OIB campaigns can be reprocessed to produce absolutely calibrated echograms for the Arctic and Antarctic. A software simulator will be developed to study calibration errors and verify the calibration software. The software for processing natural targets and crossovers will be made available in CReSIS’s open-source polar radar software toolbox. The OIB data will be reprocessed with new calibration terms, providing to the data user community a complete set of radiometrically calibrated radar echograms for the CReSIS OIB radar depth sounder for the first time.
Daniel Herr
Information Theoretic Waveform Design with Application to Physically Realizable Adaptive-on-Transmit RadarWhen & Where:
Nichols Hall, Room 129 (Ron Evans Apollo Auditorium)
Committee Members:
James Stiles, ChairChristopher Allen
Carl Leuschen
Chris Depcik
Abstract
The fundamental task of a radar system is to utilize the electromagnetic spectrum to sense a scattering environment and generate some estimate from this measurement. This task can be posed as a Bayesian estimation problem of random parameters (the scattering environment) through an imperfect sensor (the radar system). From this viewpoint, metrics such as error covariance and estimator precision (or information) can be leveraged to evaluate and improve the performance of radar systems. Here, physically realizable radar waveforms are designed to maximize the Fisher information (FI) (specifically, a derivative of FI known as marginal Fisher information (MFI)) extracted from a scattering environment thereby minimizing the expected error covariance about an estimation parameter space. This information theoretic framework, along with the high-degree of design flexibility afforded by fully digital transmitter and receiver architectures, creates a high-dimensionality design space for optimizing radar performance.
First, the problem of joint-domain range-Doppler estimation utilizing a pulse-agile radar is posed from an estimation theoretic framework, and the minimum mean square error (MMSE) estimator is shown to suppress the range-sidelobe modulation (RSM) induced by pulse agility which may improve the signal-to-interference-plus-noise ratio (SINR) in signal-limited scenarios. A computationally efficient implementation of the range-Doppler MMSE estimator is developed as a series of range-profile estimation problems, under specific modeling and statistical assumptions. Next, a transformation of the estimation parameterization is introduced which ameliorates the high noise-gain typically associated with traditional MMSE estimation by sacrificing the super-resolution achieved by the MMSE estimator. Then, coordinate descent and gradient descent optimization methods are developed for designing MFI optimal waveforms with respect to either the original or transformed estimation space. These MFI optimal waveforms are extended to provide pulse-agility, which produces high-dimensionality radar emissions amenable to non-traditional receive processing techniques (such as MMSE estimation). Finally, informationally optimal waveform design and optimal estimation are extended into a cognitive radar concept capable of adaptive and dynamic sensing. The efficacy of the MFI waveform design and MMSE estimation are demonstrated via open-air hardware experimentation where their performance is compared against traditional techniques
Matthew Heintzelman
Spatially Diverse Radar Techniques - Emission Optimization and Enhanced Receive ProcessingWhen & Where:
Nichols Hall, Room 129 (Ron Evans Apollo Auditorium)
Committee Members:
Shannon Blunt, ChairChristopher Allen
Patrick McCormick
James Stiles
Zsolt Talata
Abstract
Radar systems perform 3 basic tasks: search/detection, tracking, and imaging. Traditionally, varied operational and hardware requirements have compartmentalized these functions to distinct and specialized radars, which may communicate actionable information between them. Expedited by the growth in computational capabilities modeled by Moore’s law, next-generation radars will be sophisticated, multi-function systems comprising generalized and reprogrammable subsystems. The advance of fully Digital Array Radars (DAR) has enabled the implementation of highly directive phased arrays that can scan, detect, and track scatterers through a volume-of-interest. Conversely, DAR technology has also enabled Multiple-Input Multiple-Output (MIMO) radar methodologies that seek to illuminate all space on transmit, while forming separate but simultaneous, directive beams on receive.
Waveform diversity has been repeatedly proven to enhance radar operation through added Degrees-of-Freedom (DoF) that can be leveraged to expand dynamic range, provide ambiguity resolution, and improve parameter estimation. In particular, diversity among the DAR’s transmitting elements provides flexibility to the emission, allowing simultaneous multi-function capability. By precise design of the emission, the DAR can utilize the operationally-continuous trade-space between a fully coherent phased array and a fully incoherent MIMO system. This flexibility could enable the optimal management of the radar’s resources, where Signal-to-Noise Ratio (SNR) would be traded for robustness in detection, measurement capability, and tracking.
Waveform diversity is herein leveraged as the predominant enabling technology for multi-function radar emission design. Three methods of emission optimization are considered to design distinct beams in space and frequency, according to classical error minimization techniques. First, a gradient-based optimization of the Space-Frequency Template Error (SFTE) is applied to a high-fidelity model for a wideband array’s far-field emission. Second, a more efficient optimization is considered, based on the SFTE for narrowband arrays. Finally, a suboptimal solution, based on alternating projections, is shown to provide rapidly reconfigurable transmit patterns. To improve the dynamic range observed for MIMO radars employing pulse-agile quasi-orthogonal waveforms, a pulse-compression model is derived that manages to suppress both autocorrelation sidelobes and multi-transmitter-induced cross-correlation. The proposed waveforms and filters are implemented in hardware to demonstrate performance, validate robustness, and reflect real-world application to the degree possible with laboratory experimentation.
Anjana Lamsal
Self-homodyne Coherent Lidar System for Range and Velocity DetectionWhen & Where:
Nichols Hall, Room 246 (Executive Conference Room)
Committee Members:
Rongqing Hui, ChairAlessandro Salandrino
James Stiles
Abstract
Lidar systems are gaining popularity due to their benefits, including high resolution, precise accuracy and scalability. An FMCW lidar based on self-homodyne coherent detection technique is used for range and velocity measurement with a phase diverse coherent receiver. The system employs a self-homodyne detection technique, where a LO signal is derived directly from the same laser source as the transmitted signal and is the same linear chirp as the transmitted signal, thereby minimizing phase noise. A coherent receiver is employed to get in-phase and quadrature components of the photocurrent and to perform de-chirping. Since the LO has the same chirp as the transmitted signal, the mixing process in the photodiodes effectively cancels out the chirp or frequency modulation from the received signal. The spectrum of the de-chirped complex waveform is used to determine the range and velocity of the target. This lidar system simplifies the signal processing by using photodetectors for de-chirping. Additionally, after de-chirping, the resulting signal has a much narrower bandwidth compared to the original chirp signal and signal processing can be performed at lower frequencies.
Michael Neises
VERIAL: Verification-Enabled Runtime Integrity Attestation of LinuxWhen & Where:
Nichols Hall, Room 246 (Executive Conference Room)
Committee Members:
Perry Alexander, ChairDrew Davidson
Cuncong Zhong
Matthew Moore
Michael Murray
Abstract
Runtime attestation is a way to gain confidence in the current state of a remote target.
Layered attestation is a way of extending that confidence from one component to another.
Introspective solutions for layered attestation require strict isolation.
The seL4 is uniquely well-suited to offer kernel properties sufficient to achieve such isolation.
I design, implement, and evaluate introspective measurements and the layered runtime attestation of a Linux kernel hosted by the seL4.
VERIAL can detect diamorphine-style rootkits with performance cost comparable to previous work.
Ibikunle Oluwanisola
Towards Generalizable Deep Learning Algorithms for Echogram Layer TrackingWhen & Where:
Nichols Hall, Room 317 (Richard K. Moore Conference Room)
Committee Members:
Shannon Blunt, ChairCarl Leuschen
James Stiles
Christopher Depcik
Abstract
The accelerated melting of ice sheets in Greenland and Antarctica, driven by climate warming, is significantly contributing to global sea level rise. To better understand this phenomenon, airborne radars have been deployed to create echogram images that map snow accumulation patterns in these regions. Utilizing advanced radar systems developed by the Center for Remote Sensing and Integrated Systems (CReSIS), around 1.5 petabytes of climate data have been collected. However, extracting ice-related information, such as accumulation rates, remains limited due to the largely manual and time-consuming process of tracking internal layers in radar echograms. This highlights the need for automated solutions.
Machine learning and deep learning algorithms are well-suited for this task, given their near-human performance on optical images. The overlap between classical radar signal processing and machine learning techniques suggests that combining concepts from both fields could lead to optimized solutions.
In this work, we developed custom deep learning algorithms for automatic layer tracking (both supervised and self-supervised) to address the challenge of limited annotated data and achieve accurate tracking of radiostratigraphic layers in echograms. We introduce an iterative multi-class classification algorithm, termed “Row Block,” which sequentially tracks internal layers from the top to the bottom of an echogram based on the surface location. This approach was used in an active learning framework to expand the labeled dataset. We also developed deep learning segmentation algorithms by framing the echogram layer tracking problem as a binary segmentation task, followed by post-processing to generate vector-layer annotations using a connected-component 1-D layer-contour extractor.
Additionally, we aimed to provide the deep learning and scientific communities with a large, fully annotated dataset. This was achieved by synchronizing radar data with outputs from a regional climate model, creating what are currently the two largest machine-learning-ready Snow Radar datasets available, with 10,000 and 50,000 echograms, respectively.