Defense Notices
All students and faculty are welcome to attend the final defense of EECS graduate students completing their M.S. or Ph.D. degrees. Defense notices for M.S./Ph.D. presentations for this year and several previous years are listed below in reverse chronological order.
Students who are nearing the completion of their M.S./Ph.D. research should schedule their final defenses through the EECS graduate office at least THREE WEEKS PRIOR to their presentation date so that there is time to complete the degree requirements check, and post the presentation announcement online.
Upcoming Defense Notices
David Felton
Optimization and Evaluation of Physical Complementary Radar WaveformsWhen & Where:
Nichols Hall, Room 129 (Apollo Auditorium)
Committee Members:
Shannon Blunt, ChairRachel Jarvis
Patrick McCormick
James Stiles
Zsolt Talata
Abstract
**Currently under security review**
Hao Xuan
Toward an Integrated Computational Framework for Metagenomics: From Sequence Alignment to Automated Knowledge DiscoveryWhen & Where:
Nichols Hall, Room 246 (Executive Conference Room)
Committee Members:
Cuncong Zhong, ChairFengjun Li
Suzanne Shontz
Hongyang Sun
Liang Xu
Abstract
Metagenomic sequencing has become a central paradigm for studying complex microbial communities and their interactions with the host, with emerging applications in clinical prediction and disease modeling. In this work, we first investigate two representative application scenarios: predicting immune checkpoint inhibitor response in non-small cell lung cancer using gut microbial signatures, and characterizing host–microbiome interactions in neonatal systems. The proposed reference-free neural network captures both compositional and functional signals without reliance on reference genomes, while the neonatal study demonstrates how environmental and genetic factors reshape microbial communities and how probiotic intervention can mitigate pathogen-induced immune activation.
These studies highlight both the promise and the inherent difficulty of metagenomic analysis: transforming raw sequencing data into clinically actionable insights remains an algorithmically fragmented and computationally intensive process. This challenge arises from two key limitations: the lack of a unified algorithmic foundation for sequence alignment and the absence of systematic approaches for selecting and organizing analytical tools. Motivated by these challenges, we present a unified computational framework for metagenomic analysis that integrates complementary algorithmic and systems-level solutions.
First, to resolve fragmentation at the alignment level, we develop the Versatile Alignment Toolkit (VAT), a unified algorithmic system for biological sequence alignment across diverse applications. VAT introduces an asymmetric multi-view k-mer indexing scheme that integrates multiple seeding strategies within a single architecture and enables dynamic seed-length adjustment via longest common prefix (LCP)–based inference without re-indexing. A flexible seed-chaining mechanism further supports diverse alignment scenarios, including collinear, rearranged, and split alignments. Combined with a hardware-efficient in-register bitonic sorting algorithm and dynamic index-loading strategy, VAT achieves high efficiency and broad applicability across read mapping, homology search, and whole-genome alignment. Second, to address the challenge of tool selection and pipeline construction, we develop SNAIL, a natural language processing system for automated recognition of bioinformatics tools from large-scale and rapidly growing scientific literature. By integrating XGBoost and Transformer-based models such as SciBERT, SNAIL enables structured extraction of analytical tools and supports automated, reproducible pipeline construction.
Together, this work establishes a unified framework that is grounded in real-world applications and addresses key bottlenecks in metagenomic analysis, enabling more efficient, scalable, and clinically actionable workflows.
Pramil Paudel
Learning Without Seeing: Privacy-Preserving and Adversarial Perspectives in Lensless ImagingWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
Fengjun Li, ChairAlex Bardas
Bo Luo
Cuncong Zhong
Haiyang Chao
Abstract
Conventional computer vision relies on spatially resolved, human-interpretable images, which inherently expose sensitive information and raise privacy concerns. In this study, we explore an alternative paradigm based on lensless imaging, where scenes are captured as diffraction patterns governed by the point spread function (PSF). Although unintelligible to humans, these measurements encode structured, distributed information that remains useful for computational inference.
We propose a unified framework for privacy-preserving vision that operates directly on lensless sensor measurements by leveraging their frequency-domain and phase-encoded properties. The framework is developed along two complementary directions. First, we enable reconstruction-free inference by exploiting the intrinsic obfuscation of lensless data. We show that semantic tasks such as classification can be performed directly on diffraction patterns using models tailored to non-local, phase-scrambled representations. We further design lensless-aware architectures and integrate them into practical pipelines, including a Swin Transformer-based steganographic framework (DiffHide) for secure and imperceptible information embedding. To assess robustness, we formalize adversarial threat models and develop defenses against learning-based reconstruction attacks, particularly GAN-driven inversion. Second, we investigate the limits of privacy by studying the reconstructability of lensless measurements without explicit knowledge of the forward model. We develop learning-based reconstruction methods that approximate the inverse mapping and analyze conditions under which sensitive information can be recovered. Our results demonstrate that lensless measurements enable effective vision tasks without reconstruction, while providing a principled framework to evaluate and mitigate privacy risks.
Sharmila Raisa
Digital Coherent Optical System: Investigation and MonitoringWhen & Where:
Nichols Hall, Room 246 (Executive Conference Room)
Committee Members:
Rongqing Hui, ChairMorteza Hashemi
Erik Perrins
Alessandro Salandrino
Jie Han
Abstract
Coherent wavelength-division multiplexed (WDM) optical fiber systems have become the primary transmission technology for high-capacity data networks, driven by the explosive bandwidth demand of cloud computing, streaming services, and large-scale artificial intelligence training infrastructure. This dissertation investigates two fundamental aspects of digital coherent fiber optic systems under the unifying theme of source and monitoring: the design of multi-wavelength optical sources compatible with high-order coherent detection, and the leveraging of fiber Kerr-effect nonlinearity at the coherent receiver to perform physical-layer link health monitoring and to assess inherent security vulnerabilities — both achieved through digital signal processing of the received complex optical field without dedicated hardware.
We begin by addressing the multi-wavelength transmitter challenge in WDM coherent systems. Existing quantum-dot, quantum-dash, and quantum-well based optical frequency comb (OFC) sources share a common limitation: individual comb line linewidths in the tens of MHz range caused by low output power levels of 1–20 mW, making them incompatible with high-order coherent detection. We demonstrate coherent system application of a single-section InGaAsP QW Fabry-Perot laser diode with greater than 120 mW optical power at the fiber pigtail and 36.14 GHz mode spacing. The high optical power per mode produces Lorentzian equivalent linewidths below 100 kHz — compatible with 16-QAM carrier phase recovery without optical phase locking. Experimental results obtained using a commercial Ciena WaveLogic-Ai coherent transceiver demonstrate 20-channel WDM transmission over 78.3 km of standard single-mode fiber with all channels below the HD-FEC threshold of 3.8 × 10⁻³ at 30 GBaud differential-coded 16-QAM, corresponding to an aggregate capacity of 2.15 Tb/s from a single laser device.
After investigating the QW Fabry-Perot laser as a multi-wavelength source for coherent WDM transmission, we leverage the coherent receiver DSP to exploit fiber Kerr-effect nonlinearity for longitudinal power profile estimation, enabling reconstruction of the signal power distribution P(z) along the full multi-span link without dedicated hardware or traffic interruption. We propose a modified enhanced regular perturbation (ERP) method that corrects two independent physical error sources of the standard RP1 least-squares baseline: the accumulated nonlinear phase rotation, and the dispersion-mediated phase-to-intensity conversion — a second bias source not addressed by prior methods. The RP1 method produces mean absolute error (MAE) that scales quadratically with span count, growing to 1.656 dB at 10 spans and 3 dBm. The modified ERP reduces this to 0.608 dB — an improvement that grows consistently with link length, confirming increasing advantage in the long-haul regime. Extension to WDM through an XPM-aware per-channel formulation achieves MAE of 0.113–0.419 dB across 150–500 km link lengths.
In addition to its role in enabling DSP-based longitudinal power profile estimation, the fiber Kerr-effect nonlinearity is shown to give rise to an inherent physical-layer security vulnerability in coherent WDM systems. We show that an eavesdropper co-tenanting a shared fiber — transmitting a continuous-wave probe at a wavelength adjacent to the legitimate signal — can capture the XPM-induced waveform at the fiber output and apply a bidirectional gated recurrent unit neural network, trained on split-step Fourier method simulation data, to reconstruct the transmitted symbol sequence without physical fiber access and without perturbing the legitimate signal. This eavesdropping mechanism is experimentally validated using a commercial Ciena WaveLogic-Ai coherent transceiver for ASK, BPSK, QPSK, and 16-QAM modulation formats at 4.26 GBaud and 8.56 GBaud over one- and two-span 75 km fiber systems, achieving zero symbol errors under high-OSNR conditions. Noise-aware training over OSNR from 20 to 60 dB maintains symbol error rate below 10⁻² for OSNR above 25–30 dB.
Together, these three contributions demonstrate that the coherent fiber optic system is a versatile physical instrument extending well beyond its role as a data transmission medium. The coherent receiver infrastructure — deployed for high-order modulation and data recovery — simultaneously enables the high-power OFC laser to serve as a practical multi-wavelength transmitter source, and provides the complex field measurement capability through which fiber Kerr-effect nonlinearity can be exploited constructively for distributed link monitoring and, as a direct consequence, reveals an inherent physical-layer security exposure in shared fiber infrastructure. This unified perspective on the coherent system as both a transmission platform and a general-purpose measurement instrument has direct relevance to the design of spectrally efficient, self-monitoring, and physically secure optical interconnects for next-generation AI computing networks.
Arman Ghasemi
Task-Oriented Data Communication and Compression for Timely Forecasting and Control in Smart GridsWhen & Where:
Nichols Hall, Room 246 (Executive Conference Room)
Committee Members:
Morteza Hashemi, ChairAlexandru Bardas
Prasad Kulkarni
Taejoon Kim
Zsolt Talata
Abstract
Advances in sensing, communication, and intelligent control have transformed power systems into data-driven smart grids, where forecasting and intelligent decision-making are essential components. Modern smart grids include distributed energy resources (DERs), renewable generation, battery energy storage systems, and large numbers of grid-edge devices that continuously generate time-series data. At the same time, increasing renewable penetration introduces substantial uncertainty in generation, net load, and market operations, while communication networks impose bandwidth, latency, and reliability constraints on timely data delivery. This dissertation addresses how time-series forecasting, data compression, and task-oriented wireless communication can be jointly designed for smart grid applications.
First, we study weather-aware distributed energy management in prosumer-centric microgrids and show that incorporating day-ahead weather information into decision-making improves battery dispatch and reduces the impact of renewable uncertainty. Second, we introduce forecasting-aware energy management in both wholesale and retail electricity markets, highlighting how renewable generation forecasting affects pricing, scheduling, and uncertainty mitigation. Third, we develop and evaluate deep learning methods for renewable generation forecasting, showing that Transformer-based models outperform recurrent baselines such as RNN and LSTM for wind and solar prediction tasks.
Building on this forecasting foundation, we develop a communication-efficient forecasting framework in which high-dimensional smart grid measurements are compressed into low-dimensional latent representations before transmission. This framework is extended into a task-oriented communication system that jointly optimizes data relevance and information timeliness, so that the receiver obtains compressed updates that remain useful for downstream forecasting tasks. Finally, we extend this framework to a distributed multi-node uplink setting, where multiple grid sensors share a bandwidth-limited channel, and develop scheduling policy that improves both the timeliness and task-relevance of received updates.
Pardaz Banu Mohammad
Towards Early Detection of Alzheimer’s Disease based on Speech using Reinforcement Learning Feature SelectionWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
Arvin Agah, ChairDavid Johnson
Sumaiya Shomaji
Dongjie Wang
Sara Wilson
Abstract
Alzheimer’s Disease (AD) is a progressive, irreversible neurodegenerative disorder and the leading cause of dementia worldwide, affecting an estimated 55 million people globally. The window of opportunity for intervention is demonstrably narrow, making reliable early-stage detection a clinical and scientific imperative. While current diagnostic techniques such as neuroimaging and cerebrospinal fluid (CSF) biomarkers carry well-defined limitations in scalability, cost, and access equity, speech has emerged as a compelling non-invasive proxy for cognitive function evaluation.
This work presents a novel approach for using acoustic feature selection as a decision-making technique and implements it using deep reinforcement learning. Specifically, we use a Deep-Q-Network (DQN) agent to navigate a high dimensional feature space of over 6,000 acoustic features extracted using the openSMILE toolkit, dynamically constructing maximally discriminative and non-redundant features subsets. In order to capture the latent structural dependencies among
acoustic features which classifier and wrapper methods have difficulty to model, we introduce the Graph Convolutional Network (GCN) based correlation awareness feature representation layer that operates as an auxiliary input to the DQN state encoder. Post selection interpretability is reinforced through TF-IDF weighting and K-means clustering which together yield both feature level and cluster level explanations that are clinically actionable. The framework is evaluated across five classifiers, namely, support vector machines (SVM), logistic regression, XGBoost, random forest, and feedforward neural network. We use 10-fold stratified cross-validation on established benchmarks of datasets, including DementiaBank Pitt Corpus, Ivanova, and ADReSS challenge data. The proposed approach is benchmarked against state-of-the-art feature selection methods such as LASSO, Recursive feature selection, and mutual information selectors. This research contributes to three primary intellectual advances: (1) a graph augmented state representation that encodes inter-feature relational structure within a reinforcement learning agent, (2) a clinically interpretable pipeline that bridges the gap between algorithmic performance and translational utility, and (3) multilingual data approach for the reinforcement learning agent framework. This study has direct implications for equitable, low-cost and scalable AD screening in both clinical and community settings.
Zhou Ni
Bridging Federated Learning and Wireless Networks: From Adaptive Learning to FLdriven System OptimizationWhen & Where:
Nichols Hall, Room 246 (Executive Conference Room)
Committee Members:
Morteza Hashemi, ChairFengjun Li
Van Ly Nguyen
Han Wang
Shawn Keshmiri
Abstract
Federated learning (FL) has emerged as a promising distributed machine learning
framework that enables multiple devices to collaboratively train models without sharing raw
data, thereby preserving privacy and reducing the need for centralized data collection. However,
deploying FL in practical wireless environments introduces two major challenges. First, the data
generated across distributed devices are often heterogeneous and non-IID, which makes a single
global model insufficient for many users. Second, learning performance in wireless systems is
strongly affected by communication constraints such as interference, unreliable channels, and
dynamic resource availability. This PhD research aims to address these challenges by bridging
FL methods and wireless networks.
In the first thrust, we develop personalized and adaptive FL methods given the underlying
wireless link conditions. To this end, we propose channel-aware neighbor selection and
similarity-aware aggregation in wireless device-to-device (D2D) learning environments. We
further investigate the impacts of partial model update reception on FL performance. The
overarching goal of the first thrust is to enhance FL performance under wireless constraints.
Next, we investigate the opposite direction and raise the question: How can FL-based distributed
optimization be used for the design of next-generation wireless systems? To this end, we
investigate communication-aware participation optimization in vehicular networks, where
wireless resource allocation affects the number of clients that can successfully contribute to FL.
We further extend this direction to integrated sensing and communication (ISAC) systems,
where personalized FL (PFL) is used to support distributed beamforming optimization with joint
sensing and communication objectives.
Overall, this research establishes a unified framework for bridging FL and wireless networks. As
a future direction, this work will be extended to more realistic ISAC settings with dynamic
spectrum access, where communication, sensing, scheduling, and learning performance must be
considered jointly.
Arnab Mukherjee
Attention-Based Solutions for Occlusion Challenges in Person TrackingWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
Prasad Kulkarni, ChairSumaiya Shomaji
Hongyang Sun
Jian Li
Abstract
Person re-identification (Re-ID) and multi-object tracking in unconstrained surveillance environments pose significant challenges within the field of computer vision. These complexities stem mainly from occlusion, variability in appearance, and identity switching across various camera views. This research outlines a comprehensive and innovative agenda aimed at tackling these issues, employing a series of increasingly advanced deep learning architectures, culminating in a groundbreaking occlusion-aware Vision Transformer framework.
At the heart of this work is the introduction of Deep SORT with Multiple Inputs (Deep SORT-MI), a cutting-edge real-time Re-ID system featuring a dual-metric association strategy. This strategy adeptly combines Mahalanobis distance for motion-based tracking with cosine similarity for appearance-based re-identification. As a result, this method significantly decreases identity switching compared to the baseline SORT algorithm on the MOT-16 benchmark, thereby establishing a robust foundation for metric learning in subsequent research.
Expanding on this foundation, a novel pose-estimation framework integrates 2D skeletal keypoint features extracted via OpenPose directly into the association pipeline. By capturing the spatial relationships among body joints along with appearance features, this system enhances robustness against posture variations and partial occlusion. Consequently, it achieves substantial reductions in false positives and identity switches compared to earlier methods, showcasing its practical viability.
Furthermore, a Diverse Detector Integration (DDI) study meticulously assessed the influence of detector choices—including YOLO v4, Faster R-CNN, MobileNet SSD v2, and Deep SORT—on the efficacy of metric learning-based tracking. The results reveal that YOLO v4 consistently delivers exceptional tracking accuracy on both the MOT-16 and MOT-17 datasets, establishing its superiority in this competitive landscape.
In conclusion, this body of research notably advances occlusion-aware person Re-ID by illustrating a clear progression from metric learning to pose-guided feature extraction and ultimately to transformer-based global attention modeling. The findings underscore that lightweight, meticulously parameterized Vision Transformers can achieve impressive generalization for occlusion detection, even under constrained data scenarios. This opens up exciting prospects for integrated detection, localization, and re-identification in real-world surveillance systems, promising to enhance their effectiveness and reliability.
Sai Katari
Android Malware Detection SystemWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
David Johnson, ChairArvin Agah
Prasad Kulkarni
Abstract
Android malware remains a significant threat to mobile security, requiring efficient and scalable detection methods. This project presents an Android Malware Detection System that uses machine learning to classify applications as benign or malicious based on static permission-based analysis. The system is trained on the TUANDROMD dataset of 4,464 applications using four models-Logistic Regression, XGBoost, Random Forest, and Naive Bayes-with a 75/25 train/test split and 5-fold cross-validation on the training set for evaluation. To improve reliability, the system incorporates a hybrid decision approach that combines machine learning confidence scores with a rule-based static analysis engine, using a three-zone confidence routing mechanism to capture threats that ML alone may miss. The solution is deployed as a Flask web application with both a manual detection interface and an APK file scanner, providing predictions, confidence scores, and risk insights, ultimately supporting more informed and secure decision-making.
Ertewaa Saud Alsahayan
Toward Reliable LLM-Assisted Design Space Exploration under Performance, Cost, and Dependability ConstraintsWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
Tamzidul Hoque, ChairPrasad Kulkarni
Sumaiya Shomaji
Hongyang Sun
Huijeong Kim
Abstract
Architectural design space exploration (DSE) requires navigating large configuration spaces while satisfying multiple conflicting objectives, including performance, cost, and system dependability. Large language models (LLMs) have shown promise in assisting DSE by proposing candidate designs and interpreting simulation feedback. However, extending LLM-based DSE to realistic multi-objective settings introduces structural challenges. A naive multi-objective extension of prior LLM-based DSE approaches, which we term Co-Pilot2, exhibits reasoning instability, candidate degeneration, feasibility violations, and lack of progressive improvement. These limitations arise not from insufficient model capacity, but from the absence of structured control, verification, and decision integrity within the exploration process.
To address these challenges, this research introduces REMODEL, a structured LLM-controlled DSE framework that transforms free-form reasoning into a constrained, verifiable, and iterative optimization process. REMODEL incorporates candidate pooling across parallel reasoning instances, strict state isolation via history snapshotting, deterministic feasibility verification, canonical design representation and deduplication, explicit decision stages, and structured reasoning to enforce complete parameter coverage and consistent trend analysis. These mechanisms enable reliable and stable exploration under complex multi-objective constraints.
To support dependability-aware evaluation, the framework is integrated with cycle-accurate simulation using gem5 and its reliability-focused extension GemV, enabling detailed analysis of performance, power, and fault tolerance through vulnerability metrics. This integration allows the system to reason not only about performance–cost trade-offs, but also about reliability-aware design decisions under realistic execution conditions.
Experimental evaluation demonstrates that REMODEL identifies near-optimal designs within a small number of simulations, achieving significantly higher solution quality per simulation compared to baseline methods such as random search and genetic algorithms, while maintaining low computational overhead.
This work establishes a foundation for dependable LLM-assisted DSE by incorporating reliability constraints into the exploration loop. As a future direction, this framework will be extended to incorporate security-aware design considerations, enabling unified reasoning over performance, cost, reliability, and system security.
Bretton Scarbrough
Structured Light for Particle Manipulation: Hologram Generation and Optical Binding SimulationWhen & Where:
Nichols Hall, Room 246 (Executive Conference Room)
Committee Members:
Shima Fardad, ChairRongqing Hui
Alessandro Salandrino
Abstract
This thesis addresses two related problems in the optical manipulation of microscopic particles: the efficient generation of holograms for holographic optical tweezers and the simulation of multi-particle optical binding. Holographic optical tweezers use phase-only spatial light modulators to create programmable optical trapping fields, enabling dynamic control over the number, position, and relative strength of optical traps. Because the quality of the trapping field depends strongly on the computed hologram, the first part of this work focuses on improving hologram-generation methods used in these systems.
A new phase-induced compressive sensing algorithm is presented for holographic optical tweezers, along with weighted and unweighted variants. These methods are developed from the Gerchberg-Saxton framework and are designed to improve computational efficiency while preserving favorable trapping characteristics such as uniformity and optical efficiency. By combining compressive sensing with phase induction, the proposed algorithms reduce the computational burden associated with iterative hologram generation while maintaining strong performance across a variety of trapping arrangements. Comparative simulations are used to evaluate these methods against several established hologram-generation algorithms, and the results show that the proposed approaches offer meaningful improvements in convergence behavior and overall performance.
The second part of this thesis examines optical binding, a phenomenon in which multiple particles interact through both the incident optical field and the fields scattered by neighboring particles. To study this process, a numerical simulation is developed that incorporates gradient forces, radiation pressure, and light-mediated particle-particle interactions in both two- and three-dimensional configurations. The simulation is used to investigate how particles evolve under different initial conditions and illumination states, and how collective effects influence the formation of stable or semi-stable arrangements. These results provide insight into the role of scattering-mediated forces in many-particle optical systems and highlight differences between two-dimensional and three-dimensional behavior.
Although hologram generation and optical binding are treated as separate problems in this work, they are connected by a common goal: understanding how structured optical fields can be designed and applied to control microscopic matter. Together, the results of this thesis contribute to the broader study of computational beam shaping and many-body optical interactions, with relevance to advanced optical trapping, particle organization, and dynamically reconfigurable light-driven systems.
Sai Rithvik Gundla
Beyond Regression Accuracy: Evaluating Runtime Prediction for Scheduling Input Sensitive WorkloadsWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
Hongyang Sun, ChairArvin Agah
David Johnson
Abstract
Runtime estimation plays a structural role in reservation-based scheduling for High Performance Computing (HPC) systems, where predicted walltimes directly influence reservation timing, backfilling feasibility, and overall queue dynamics. This raises a fundamental question of whether improved runtime prediction accuracy necessarily translates into improved scheduling performance. In this work, we conduct an empirical study of runtime estimation under EASY Backfilling using an application-driven workload consisting of MRI-based brain segmentation jobs. Despite identical configurations and uniform metadata, runtimes exhibit substantial variability driven by intrinsic input structure. To capture this variability, we develop a feature-driven machine learning (ML) framework that extracts region-wise features from MRI volumes to predict job runtimes without relying on historical execution traces or scheduling metadata. We integrate these ML-derived predictions into an EASY Backfilling scheduler implemented in the Batsim simulation framework. Our results show that regression accuracy alone does not determine scheduling performance. Instead, scheduling performance depends strongly on estimation bias and its effect on reservation timing and runtime exceedances. In particular, mild multiplicative calibration of ML-based runtime estimates stabilizes scheduler behavior and yields consistently competitive performance across workload and system configurations. Comparable performance can also be observed with certain levels of uniform overestimation; however, calibrated ML predictions provide a systematic mechanism to control estimation bias without relying on arbitrary static inflation. In contrast, underestimation consistently leads to severe performance degradation and cascading job terminations. These findings highlight runtime estimation as a structural control input in backfilling-based HPC scheduling and demonstrate the importance of evaluating prediction models jointly with scheduling dynamics rather than through regression metrics alone.
Pavan Sai Reddy Pendry
BabyJay - A RAG Based Chatbot for the University of KansasWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
David Johnson, ChairRachel Jarvis
Prasad Kulkarni
Abstract
The University of Kansas maintains hundreds of departmental and unit websites, leaving students without a unified way to find information. General-purpose chatbots hallucinate KU-specific facts, and static FAQ pages cannot hold a conversation. This work presents BabyJay, a Retrieval-Augmented Generation chatbot that answers student questions using content scraped from official KU sources, with inline citations on every response. The pipeline combines query preprocessing and decomposition, an intent classifier that routes most queries to fast JSON lookups, hybrid retrieval (BM25 and ChromaDB vector search merged via Reciprocal Rank Fusion), a cross-encoder re-ranker, and generation by Claude Sonnet 4.6 under a context-only system prompt. Evaluation on 46 question-answer pairs across five difficulty tiers and eight domains produced a composite score of 0.72, entity precision of 93%, and zero runtime errors. Retrieval, rather than generation, emerged as the primary bottleneck, motivating future work on multi-domain query handling.
Ye Wang
Toward Practical and Stealthy Sensor Exploitation: Physical, Contextual, and Control-Plane Attack ParadigmsWhen & Where:
Nichols Hall, Room 250 (Gemini Conference Room)
Committee Members:
Fengjun Li, ChairDrew Davidson
Rongqing Hui
Bo Luo
Haiyang Chao
Abstract
Modern intelligent systems increasingly rely on continuous sensor data streams for perception, decision-making, and control, making sensors a critical yet underexplored attack surface. While prior research has demonstrated the feasibility of sensor-based attacks, recent advances in mobile operating systems and machine learning-based defenses have significantly reduced their practicality, rendering them more detectable, resource-intensive, and constrained by evolving permission and context-aware security models.
This dissertation revisits sensor exploitation under these modern constraints and develops a unified, cross-layer perspective that improves both practicality and stealth of sensor-enabled attacks. We identify three fundamental challenges: (i) the difficulty of reliably manipulating physical sensor signals in noisy, real-world environments; (ii) the effectiveness of context-aware defenses in detecting anomalous sensor behavior on mobile devices, and (iii) the lack of lightweight coordination for practical sensor-based side- and covert-channels.
To address the first challenge, we propose a physical-domain attack framework that integrates signal modeling, simulation-guided attack synthesis, and real-time adaptive targeting, enabling robust adversarial perturbations with high attack success rates even under environmental uncertainty. As a case study, we demonstrate an infrared laser-based adversarial example attack against face recognition systems, which achieves consistently high success rates across diverse conditions with practical execution overhead.
To improve attack stealth against context-aware defenses, we introduce an auto-contextualization mechanism that synchronizes malicious sensor actuation with legitimate application activity. By aligning injected signals with both statistical patterns and semantic context of benign behavior, the approach renders attacks indistinguishable from normal system operations and benign sensor usage. We validate this design using three Android logic bombs, showing that auto-contextualized triggers can evade both rule-based and learning-based detection mechanisms.
Finally, we extend sensor exploitation beyond the traditional attack-channel plane by introducing a lightweight control-plane protocol embedded within sensor data streams. This protocol encodes control signals directly into sensor observations and leverages simple signal-processing primitives to coordinate multi-stage attacks without relying on privileged APls or explicit inter-process communication. The resulting design enables low-overhead, stealthy coordination of cross-device side- and covert-channels.
Together, these contributions establish a new paradigm for sensor exploitation that spans physical, contextual, and control-plane dimensions. By bridging these layers, this dissertation demonstrates that sensor-based attacks remain not only feasible but also practical and stealthy in modern computer systems.
Jamison Bond
Mutual Coupling Array Calibration Utilizing Decomposition of Modeled Scattering MatrixWhen & Where:
Nichols Hall, Room 250 (Gemini Conference Room)
Committee Members:
Patrick McCormick, ChairShannon Blunt
Carl Leuschen
Abstract
Modern phased-array antenna calibration is essential for advanced radar systems to achieve precise beamforming, sidelobe control, and coherent processing. While mutual coupling-based calibration provides a valuable internal alternative to external far-field references by exploiting near-field element interactions, the problem is fundamentally ill-posed. Measured responses depend simultaneously on transmit coefficients, receive coefficients, and the coupling matrix, making it difficult to isolate true channel errors from array-model mismatch without additional structure.
This thesis presents a Bayesian Maximum A Posteriori (MAP) calibration framework that resolves this ambiguity by embedding physically motivated prior information into the estimation problem. The nominal coupling matrix is decomposed into Infinite, Symmetric, and Reciprocal components, which define low-dimensional parameterizations and prior covariance models. A Maximum Likelihood (ML) stage first generates a data-consistent transceiver initialization, followed by a MAP estimator that refines the solution by jointly addressing structured coupling deviations and measurement uncertainty.
Evaluations using Computational Electromagnetic (CEM) models and measured WaDES array data reveal that the physical array contains more higher-order structural content than the nominal CEM model. Across Monte Carlo trials, highly structured MAP estimators generally achieve lower aggregate error than unconstrained ML and Log Least Squares (LLS) methods. The overlapping-subspace M family offers an optimal balance of structural flexibility, zero-centered phase and magnitude behavior, and tuning robustness. Additionally, parametric sweeps highlight that prior covariance scaling is a critical design parameter: tight reciprocal priors prevent spurious structural absorption, whereas overly loose priors allow model mismatch to contaminate transceiver estimates.
Ultimately, this work demonstrates that internal mutual coupling calibration can achieve autonomy and robustness against model mismatch by parameterizing the nominal coupling matrix into structured components and integrating them as Bayesian priors.
Kevin Likcani
Use of Machine Learning to Predict Drug Court SuccessWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
David Johnson, ChairPrasad Kulkarni
Heechul Yun
Abstract
Substance use remains a major public health issue in the United States that significantly impacts individuals, families, and society. Many individuals who suffer from substance use disorder (SUD) face incarceration due to drug-related offenses. Drug courts have emerged as an alternative to imprisonment and offer the opportunity for individuals to participate in a drug rehabilitation program instead. Drug courts mainly focus on those with non-violent drug-related offenses. One of the challenges of decision making in drug courts is assessing the likelihood of participants graduating from the drug court and avoiding recidivism after graduation. This study investigates the use of machine learning models to predict success in drug courts using data from a substance use drug court in Missouri. Success is measured in terms of graduation from the program, and the model includes a wide range of potential predictors including demographic characteristics, family and social factors, substance use history, legal involvement, physical and mental health history, employment history as well as drug court participation data. The results will be beneficial to drug court teams and presiding judges in predicting client success, evaluating risk factors during treatment for participants, informing person-centered treatment planning, and the development of after-care plans for high-risk participants to reduce the likelihood of recidivism.
Past Defense Notices
SM Ishraq-Ul Islam
Quantum Circuit Synthesis using Genetic Algorithms Combined with Fuzzy LogicWhen & Where:
LEEP2, Room 1420
Committee Members:
Esam El-Araby, ChairTamzidul Hoque
Prasad Kulkarni
Abstract
Quantum computing emerges as a promising direction for high-performance computing in the post-Moore era. Leveraging quantum mechanical properties, quantum devices can theoretically provide significant speedup over classical computers in certain problem domains. Quantum algorithms are typically expressed as quantum circuits composed of quantum gates, or as unitary matrices. Execution of quantum algorithms on physical devices requires translation to machine-compatible circuits -- a process referred to as quantum compilation or synthesis.
Quantum synthesis is a challenging problem. Physical quantum devices support a limited number of native basis gates, requiring synthesized circuits to be composed of only these gates. Moreover, quantum devices typically have specific qubit topologies, which constrain how and where gates can be applied. Consequently, logical qubits in input circuits and unitaries may need to be mapped to and routed between physical qubits on the device.
Current Noisy Intermediate-Scale Quantum (NISQ) devices present additional constraints, through their gate errors and high susceptibility to noise. NISQ devices are vulnerable to errors during gate application and their short decoherence times leads to qubits rapidly succumbing to accumulated noise and possibly corrupting computations. Therefore, circuits synthesized for NISQ devices need to have a low number of gates to reduce gate errors, and short execution times to avoid qubit decoherence.
The problem of synthesizing device-compatible quantum circuits, while optimizing for low gate count and short execution times, can be shown to be computationally intractable using analytical methods. Therefore, interest has grown towards heuristics-based compilation techniques, which are able to produce approximations of the desired algorithm to a required degree of precision. In this work, we investigate using Genetic Algorithms (GAs) -- a proven gradient-free optimization technique based on natural selection -- for circuit synthesis. In particular, we formulate the quantum synthesis problem as a multi-objective optimization (MOO) problem, with the objectives of minimizing the approximation error, number of multi-qubit gates, and circuit depth. We also employ fuzzy logic for runtime parameter adaptation of GA to enhance search efficiency and solution quality of our proposed quantum synthesis method.
Sravan Reddy Chintareddy
Combating Spectrum Crunch with Efficient Machine-Learning Based Spectrum Access and Harnessing High-frequency Bands for Next-G Wireless NetworksWhen & Where:
Nichols Hall, Room 246 (Executive Conference Room)
Committee Members:
Morteza Hashemi, ChairVictor Frost
Erik Perrins
Dongjie Wang
Shawn Keshmiri
Abstract
There is an increasing trend in the number of wireless devices that is now already over 14 billion and is expected to grow to 40 billion devices by 2030. In addition, we are witnessing an unprecedented proliferation of applications and technologies with wireless connectivity requirements such as unmanned aerial vehicles, connected health, and radars for autonomous vehicles. The advent of new wireless technologies and devices will only worsen the current spectrum crunch that service providers and wireless operators are already experiencing. In this PhD study, we address these challenges through the following research thrusts, in which we consider two emerging applications aimed at advancing spectrum efficiency and high-frequency connectivity solutions.
First, we focus on effectively utilizing the existing spectrum resources for emerging applications such as networked UAVs operating within the Unmanned Traffic Management (UTM) system. In this thrust, we develop a coexistence framework for UAVs to share spectrum with traditional cellular networks by using machine learning (ML) techniques so that networked UAVs act as secondary users without interfering with primary users. We propose federated learning (FL) and reinforcement learning (RL) solutions to establish a collaborative spectrum sensing and dynamic spectrum allocation framework for networked UAVs. In the second part, we explore the potential of millimeter-wave (mmWave) and terahertz (THz) frequency bands for high-speed data transmission in urban settings. Specifically, we investigate THz-based midhaul links for 5G networks, where a network's central units (CUs) connect to distributed units (DUs). Through numerical analysis, we assess the feasibility of using 140 GHz links and demonstrate the merits of high-frequency bands to support high data rates in midhaul networks for future urban communications infrastructure. Overall, this research is aimed at establishing frameworks and methodologies that contribute toward the sustainable growth and evolution of wireless connectivity.
Arnab Mukherjee
Attention-Based Solutions for Occlusion Challenges in Person TrackingWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
Prasad Kulkarni, ChairSumaiya Shomaji
Hongyang Sun
Jian Li
Abstract
Person tracking and association is a complex task in computer vision applications. Even with a powerful detector, a highly accurate association algorithm is necessary to match and track the correct person across all frames. This method has numerous applications in surveillance, and its complexity increases with the number of detected objects and their movements across frames. A significant challenge in person tracking is occlusion, which occurs when an individual being tracked is partially or fully blocked by another object or person. This can make it difficult for the tracking system to maintain the identity of the individual and track them effectively.
In this research, we propose a solution to the occlusion problem by utilizing an occlusion-aware spatial attention transformer. We have divided the entire tracking association process into two scenarios: occlusion and no-occlusion. When a detected person with a specific ID suddenly disappears from a frame for a certain period, we employ advanced methods such as Detector Integration and Pose Estimation to ensure the correct association. Additionally, we implement a spatial attention transformer to differentiate these occluded detections, transform them, and then match them with the correct individual using the Cosine Similarity Metric.
The features extracted from the attention transformer provide a robust baseline for detecting people, enhancing the algorithms adaptability and addressing key challenges associated with existing approaches. This improved method reduces the number of misidentifications and instances of ID switching while also enhancing tracking accuracy and precision.
Agraj Magotra
Data-Driven Insights into Sustainability: An Artificial Intelligence (AI) Powered Analysis of ESG Practices in the Textile and Apparel IndustryWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
Sumaiya Shomaji, ChairPrasad Kulkarni
Zijun Yao
Abstract
The global textile and apparel (T&A) industry is under growing scrutiny for its substantial environmental and social impact, producing 92 million tons of waste annually and contributing to 20% of global water pollution. In Bangladesh, one of the world's largest apparel exporters, the integration of Environmental, Social, and Governance (ESG) practices is critical to meet international sustainability standards and maintain global competitiveness. This master's study leverages Artificial Intelligence (AI) and Machine Learning (ML) methodologies to comprehensively analyze unstructured corporate data related to ESG practices among LEED-certified Bangladeshi T&A factories.
Our study employs advanced techniques, including Web Scraping, Natural Language Processing (NLP), and Topic Modeling, to extract and analyze sustainability-related information from factory websites. We develop a robust ML framework that utilizes Non-Negative Matrix Factorization (NMF) for topic extraction and a Random Forest classifier for ESG category prediction, achieving an 86% classification accuracy. The study uncovers four key ESG themes: Environmental Sustainability, Social : Workplace Safety and Compliance, Social: Education and Community Programs, and Governance. The analysis reveals that 46% of factories prioritize environmental initiatives, such as energy conservation and waste management, while 44% emphasize social aspects, including workplace safety and education. Governance practices are significantly underrepresented, with only 10% of companies addressing ethical governance, healthcare provisions and employee welfare.
To deepen our understanding of the ESG themes, we conducted a Centrality Analysis to identify the most influential keywords within each category, using measures such as degree, closeness, and eigenvector centrality. Furthermore, our analysis reveals that higher certification levels, like Platinum, are associated with a more balanced emphasis on environmental, social, and governance practices, while lower levels focus primarily on environmental efforts. These insights highlight key areas where the industry can improve and inform targeted strategies for enhancing ESG practices. Overall, this ML framework provides a data-driven, scalable approach for analyzing unstructured corporate data and promoting sustainability in Bangladesh’s T&A sector, offering actionable recommendations for industry stakeholders, policymakers, and global brands committed to responsible sourcing.
Samyoga Bhattarai
‘Pro-ID: A Secure Face Recognition System using Locality Sensitive Hashing to Protect Human ID’When & Where:
Eaton Hall, Room 2001B
Committee Members:
Sumaiya Shomaji, ChairTamzidul Hoque
Hongyang Sun
Abstract
Face recognition systems are widely used in various applications, from mobile banking apps to personal smartphones. However, these systems often store biometric templates in raw form, posing significant security and privacy risks. Pro-ID addresses this vulnerability by incorporating SimHash, an algorithm of Locality Sensitive Hashing (LSH), to create secure and irreversible hash codes of facial feature vectors. Unlike traditional methods that leave raw data exposed to potential breaches, SimHash transforms the feature space into high-dimensional hash codes, safeguarding user identity while preserving system functionality.
The proposed system creates a balance between two aspects: security and the system’s performance. Additionally, the system is designed to resist common attacks, including brute force and template inversion, ensuring that even if the hashed templates are exposed, the original biometric data cannot be reconstructed.
A key challenge addressed in this project is minimizing the trade-off between security and performance. Extensive evaluations demonstrate that the proposed method maintains competitive accuracy rates comparable to traditional face recognition systems while significantly enhancing security metrics such as irreversibility, unlinkability, and revocability. This innovative approach contributes to advancing the reliability and trustworthiness of biometric systems, providing a secure framework for applications in face recognition systems.
Shalmoli Ghosh
High-Power Fabry-Perot Quantum-Well Laser Diodes for Application in Multi-Channel Coherent Optical Communication SystemsWhen & Where:
Nichols Hall, Room 246 (Executive Conference Room)
Committee Members:
Rongqing Hui , ChairShannon Blunt
Jim Stiles
Abstract
Wavelength Division Multiplexing (WDM) is essential for managing rapid network traffic growth in fiber optic systems. Each WDM channel demands a narrow-linewidth, frequency-stabilized laser diode, leading to complexity and increased energy consumption. Multi-wavelength laser sources, generating optical frequency combs (OFC), offer an attractive solution, enabling a single laser diode to provide numerous equally spaced spectral lines for enhanced bandwidth efficiency.
Quantum-dot and quantum-dash OFCs provide phase-synchronized lines with low relative intensity noise (RIN), while Quantum Well (QW) OFCs offer higher power efficiency, but they have higher RIN in the low frequency region of up to 2 GHz. However, both quantum-dot/dash and QW based OFCs, individual spectral lines exhibit high phase noise, limiting coherent detection. Output power levels of these OFCs range between 1-20 mW where the power of each spectral line is typically less than -5 dBm. Due to this requirement, these OFCs require excessive optical amplification, also they possess relatively broad spectral linewidths of each spectral line, due to the inverse relationship between optical power and linewidth as per the Schawlow-Townes formula. This constraint hampers their applicability in coherent detection systems, highlighting a challenge for achieving high-performance optical communication.
In this work, coherent system application of a single-section Quantum-Well Fabry-Perot (FP) laser diode is demonstrated. This laser delivers over 120 mW optical power at the fiber pigtail with a mode spacing of 36.14 GHz. In an experimental setup, 20 spectral lines from a single laser transmitter carry 30 GBaud 16-QAM signals over 78.3 km single-mode fiber, achieving significant data transmission rates. With the potential to support a transmission capacity of 2.15 Tb/s (4.3 Tb/s for dual polarization) per transmitter, including Forward Error Correction (FEC) and maintenance overhead, it offers a promising solution for meeting the escalating demands of modern network traffic efficiently.
TJ Barclay
Proof-Producing Translation from Gallina to CakeMLWhen & Where:
Nichols Hall, Room 250 (Gemini Room)
Committee Members:
Perry Alexander, ChairAlex Bardas
Drew Davidson
Sankha Guria
Eileen Nutting
Abstract
Users of theorem provers often desire to to extract their verified code to a
more efficient, compiled language. Coq's current extraction mechanism provides
this facility but does not provide a formal guarantee that the extracted code
has the same semantics as the logic it is extracted from. Providing such a
guarantee requires a formal semantics for the target code. The CakeML
project, implemented in HOL4, provides a formally defined syntax and semantics
for a subset of SML and includes a proof-producing translator from
higher-order logic to CakeML. We use the CakeML definition to develop a
certifying extractor to CakeML from Gallina using the translation and proof techniques
of the HOL4 CakeML translator. We also address how differences
between HOL4 (higher-order logic) and Coq (calculus of constructions) effect
the implementation details of the Coq translator.
Anissa Khan
Privacy Preserving Biometric MatchingWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
Perry Alexander, ChairPrasad Kulkarni
Fengjun Li
Abstract
Biometric matching is a process by which distinct features are used to identify an individual. Doing so privately is important because biometric data, such as fingerprints or facial features, is not something that can be easily changed or updated if put at risk. In this study, we perform a piece of the biometric matching process in a privacy preserving manner by using secure multiparty computation (SMPC). Using SMPC allows the identifying biological data, called a template, to remain stored by the data owner during the matching process. This provides security guarantees to the biological data while it is in use and therefore reduces the chances the data is stolen. In this study, we find that performing biometric matching using SMPC is just as accurate as performing the same match in plaintext.
Bryan Richlinski
Prioritize Program Diversity: Enumerative Synthesis with Entropy OrderingWhen & Where:
Nichols Hall, Room 246 (Executive Conference Room)
Committee Members:
Sankha Guria, ChairPerry Alexander
Drew Davidson
Jennifer Lohoefener
Abstract
Program synthesis is a popular way to create a correct-by-construction program from a user-provided specification.
Term enumeration is a leading technique to systematically explore the space of programs by generating terms from a formal grammar.
These terms are treated as candidate programs which are tested/verified against the specification for correctness.
In order to prioritize candidates more likely to satisfy the specification, enumeration is often ordered by program size or other domain-specific heuristics.
However, domain-specific heuristics require expert knowledge, and enumeration by size often leads to terms comprised of frequently
repeating symbols that are less likely to satisfy a specification.
In this thesis, we build a heuristic that prioritizes term enumeration based on variability of individual symbols in the program, i.e.,
information entropy of the program. We use this heuristic to order programs in both top-down and bottom-up enumeration.
We evaluated our work on a subset of the PBE-String track of the 2017 SyGuS competition benchmarks and compared against size-based enumeration.
Top-down enumeration guided by entropy expands upon fewer partial expressions than naive in 77\% of benchmarks,
and tests fewer complete expressions in 54\%, resulting in improved synthesis time in 40\% of benchmarks.
However, 71\% of benchmarks in bottom-up enumeration using entropy tests fewer expressions than naive enumeration, without any improvements to the running time.
We conclude entropy is a promising direction to prioritize candidates during program search in enumerative synthesis,
and propose a future directions for improving performance of our proposed techniques.
Elizabeth Wyss
A New Frontier for Software Security: Diving Deep into npmWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
Drew Davidson, ChairAlex Bardas
Fengjun Li
Bo Luo
J. Walker
Abstract
Open-source package managers (e.g., npm for Node.js) have become an established component of modern software development. Rather than creating applications from scratch, developers may employ modular software dependencies and frameworks--called packages--to serve as building blocks for writing larger applications. Package managers make this process easy. With a simple command line directive, developers are able to quickly fetch and install packages across vast open-source repositories. npm--the largest of such repositories--alone hosts millions of unique packages and serves billions of package downloads each week.
However, the widespread code sharing resulting from open-source package managers also presents novel security implications. Vulnerable or malicious code hiding deep within package dependency trees can be leveraged downstream to attack both software developers and the users of their applications. This downstream flow of software dependencies--dubbed the software supply chain--is critical to secure.
This research provides a deep dive into the npm-centric software supply chain, exploring various facets and phenomena that impact the security of this software supply chain. Such factors include (i) hidden code clones--which obscure provenance and can stealthily propagate known vulnerabilities, (ii) install-time attacks enabled by unmediated installation scripts, (iii) hard-coded URLs residing in package code, (iv) the impacts open-source development practices, and (v) package compromise via malicious updates. For each facet, tooling is presented to identify and/or mitigate potential security impacts. Ultimately, it is our hope that this research fosters greater awareness, deeper understanding, and further efforts to forge a new frontier for the security of modern software supply chains.