Defense Notices


All students and faculty are welcome to attend the final defense of EECS graduate students completing their M.S. or Ph.D. degrees. Defense notices for M.S./Ph.D. presentations for this year and several previous years are listed below in reverse chronological order.

Students who are nearing the completion of their M.S./Ph.D. research should schedule their final defenses through the EECS graduate office at least THREE WEEKS PRIOR to their presentation date so that there is time to complete the degree requirements check, and post the presentation announcement online.

Upcoming Defense Notices

Elizabeth Wyss

A New Frontier for Software Security: Diving Deep into npm

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Drew Davidson, Chair
Alex Bardas
Fengjun Li
Bo Luo
J. Walker

Abstract

Open-source package managers (e.g., npm for Node.js) have become an established component of modern software development. Rather than creating applications from scratch, developers may employ modular software dependencies and frameworks--called packages--to serve as building blocks for writing larger applications. Package managers make this process easy. With a simple command line directive, developers are able to quickly fetch and install packages across vast open-source repositories. npm--the largest of such repositories--alone hosts millions of unique packages and serves billions of package downloads each week. 

However, the widespread code sharing resulting from open-source package managers also presents novel security implications. Vulnerable or malicious code hiding deep within package dependency trees can be leveraged downstream to attack both software developers and the end-users of their applications. This downstream flow of software dependencies--dubbed the software supply chain--is critical to secure.

This research provides a deep dive into the npm-centric software supply chain, exploring distinctive phenomena that impact its overall security and usability. Such factors include (i) hidden code clones--which may stealthily propagate known vulnerabilities, (ii) install-time attacks enabled by unmediated installation scripts, (iii) hard-coded URLs residing in package code, (iv) the impacts of open-source development practices, (v) package compromise via malicious updates, (vi) spammers disseminating phishing links within package metadata, and (vii) abuse of cryptocurrency protocols designed to reward the creators of high-impact packages. For each facet, tooling is presented to identify and/or mitigate potential security impacts. Ultimately, it is our hope that this research fosters greater awareness, deeper understanding, and further efforts to forge a new frontier for the security of modern software supply chains. 


Audrey Mockenhaupt

Using Dual Function Radar Communication Waveforms for Synthetic Aperture Radar Automatic Target Recognition

When & Where:


Nichols Hall, Room 246 (Executive Conference Room)

Committee Members:

Patrick McCormick, Chair
Shannon Blunt
Jon Owen


Abstract

Pending.


Rich Simeon

Delay-Doppler Channel Estimation for High-Speed Aeronautical Mobile Telemetry Applications

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Erik Perrins, Chair
Shannon Blunt
Morteza Hashemi
Jim Stiles
Craig McLaughlin

Abstract

The next generation of digital communications systems aims to operate in high-Doppler environments such as high-speed trains and non-terrestrial networks that utilize satellites in low-Earth orbit. Current generation systems use Orthogonal Frequency Division Multiplexing modulation which is known to suffer from inter-carrier interference (ICI) when different channel paths have dissimilar Doppler shifts.

A new Orthogonal Time Frequency Space (OTFS) modulation (also known as Delay-Doppler modulation) is proposed as a candidate modulation for 6G networks that is resilient to ICI. To date, OTFS demodulation designs have focused on the use cases of popular urban terrestrial channel models where path delay spread is a fraction of the OTFS symbol duration. However, wireless wide-area networks that operate in the aeronautical mobile telemetry (AMT) space can have large path delay spreads due to reflections from distant geographic features. This presents problems for existing channel estimation techniques which assume a small maximum expected channel delay, since data transmission is paused to sound the channel by an amount equal to twice the maximum channel delay. The dropout in data contributes to a reduction in spectral efficiency.

Our research addresses OTFS limitations in the AMT use case. We start with an exemplary OTFS framework with parameters optimized for AMT. Following system design, we focus on two distinct areas to improve OTFS performance in the AMT environment. First we propose a new channel estimation technique using a pilot signal superimposed over data that can measure large delay spread channels with no penalty in spectral efficiency. A successive interference cancellation algorithm is used to iteratively improve channel estimates and jointly decode data. A second aspect of our research aims to equalize in delay-Doppler space. In the delay-Doppler paradigm, the rapid channel variations seen in the time-frequency domain is transformed into a sparse quasi-stationary channel in the delay-Doppler domain. We propose to use machine learning using Gaussian Process Regression to take advantage of the sparse and stationary channel and learn the channel parameters to compensate for the effects of fractional Doppler in which simpler channel estimation techniques cannot mitigate. Both areas of research can advance the robustness of OTFS across all communications systems.


Soumya Baddham

Battling Toxicity: A Comparative Analysis of Machine Learning Models for Content Moderation

When & Where:


Eaton Hall, Room 2001B

Committee Members:

David Johnson, Chair
Prasad Kulkarni
Hongyang Sun


Abstract

With the exponential growth of user-generated content, online platforms face unprecedented challenges in moderating toxic and harmful comments. Due to this, Automated content moderation has emerged as a critical application of machine learning, enabling platforms to ensure user safety and maintain community standards. Despite its importance, challenges such as severe class imbalance, contextual ambiguity, and the diverse nature of toxic language often compromise moderation accuracy, leading to biased classification performance.

This project presents a comparative analysis of machine learning approaches for a Multi-Label Toxic Comment Classification System using the Toxic Comment Classification dataset from Kaggle.  The study examines the performance of traditional algorithms, such as Logistic Regression, Random Forest, and XGBoost, alongside deep architectures, including Bi-LSTM, CNN-Bi-LSTM, and DistilBERT. The proposed approach utilizes word-level embeddings across all models and examines the effects of architectural enhancements, hyperparameter optimization, and advanced training strategies on model robustness and predictive accuracy.

The study emphasizes the significance of loss function optimization and threshold adjustment strategies in improving the detection of minority classes. The comparative results reveal distinct performance trade-offs across model architectures, with transformer models achieving superior contextual understanding at the cost of computational complexity. At the same time, deep learning approaches(LSTM models) offer efficiency advantages. These findings establish evidence-based guidelines for model selection in real-world content moderation systems, striking a balance between accuracy requirements and operational constraints.


Manu Chaudhary

Utilizing Quantum Computing for Solving Multidimensional Partial Differential Equations

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Esam El-Araby, Chair
Perry Alexander
Tamzidul Hoque
Prasad Kulkarni
Tyrone Duncan

Abstract

Quantum computing has the potential to revolutionize computational problem-solving by leveraging the quantum mechanical phenomena of superposition and entanglement, which allows for processing a large amount of information simultaneously. This capability is significant in the numerical solution of complex and/or multidimensional partial differential equations (PDEs), which are fundamental to modeling various physical phenomena. There are currently many quantum techniques available for solving partial differential equations (PDEs), which are mainly based on variational quantum circuits. However, the existing quantum PDE solvers, particularly those based on variational quantum eigensolver (VQE) techniques, suffer from several limitations. These include low accuracy, high execution times, and low scalability on quantum simulators as well as on noisy intermediate-scale quantum (NISQ) devices, especially for multidimensional PDEs.

 In this work, we propose an efficient and scalable algorithm for solving multidimensional PDEs. We present two variants of our algorithm: the first leverages finite-difference method (FDM), classical-to-quantum (C2Q) encoding, and numerical instantiation, while the second employs FDM, C2Q, and column-by-column decomposition (CCD). Both variants are designed to enhance accuracy and scalability while reducing execution times. We have validated and evaluated our proposed concepts using a number of case studies including multidimensional Poisson equation, multidimensional heat equation, Black Scholes equation, and Navier-Stokes equation for computational fluid dynamics (CFD) achieving promising results. Our results demonstrate higher accuracy, higher scalability, and faster execution times compared to VQE-based solvers on noise-free and noisy quantum simulators from IBM. Additionally, we validated our approach on hardware emulators and actual quantum hardware, employing noise mitigation techniques. This work establishes a practical and effective approach for solving PDEs using quantum computing for engineering and scientific applications.


Alex Manley

Taming Complexity in Computer Architecture through Modern AI-Assisted Design and Education

When & Where:


Nichols Hall, Room 250 (Gemini Room)

Committee Members:

Heechul Yun, Chair
Tamzidul Hoque
Prasad Kulkarni
Mohammad Alian

Abstract

The escalating complexity inherent in modern computer architecture presents significant challenges for both professional hardware designers and students striving to gain foundational understanding. Historically, the steady improvement of computer systems was driven by transistor scaling, predictable performance increases, and relatively straightforward architectural paradigms. However, with the end of traditional scaling laws and the rise of heterogeneous and parallel architectures, designers now face unprecedented intricacies involving power management, thermal constraints, security considerations, and sophisticated software interactions. Prior tools and methodologies, often reliant on complex, command-line driven simulations, exacerbate these challenges by introducing steep learning curves, creating a critical need for more intuitive, accessible, and efficient solutions. To address these challenges, this thesis introduces two innovative, modern tools.

The first tool, SimScholar, provides an intuitive graphical user interface (GUI) built upon the widely-used gem5 simulator. SimScholar significantly simplifies the simulation process, enabling students and educators to more effectively engage with architectural concepts through a visually guided environment, both reducing complexity and enhancing conceptual understanding. Supporting SimScholar, the gem5 Extended Modules API (gEMA) offers streamlined backend integration with gem5, ensuring efficient communication, modularity, and maintainability.

The second contribution, gem5 Co-Pilot, delivers an advanced framework for architectural design space exploration (DSE). Co-Pilot integrates cycle-accurate simulation via gem5, detailed power and area modeling through McPAT, and intelligent optimization assisted by a large language model (LLM). Central to Co-Pilot is the Design Space Declarative Language (DSDL), a Python-based domain-specific language that facilitates structured, clear specification of design parameters and constraints.

Collectively, these tools constitute a comprehensive approach to taming complexity in computer architecture, offering powerful, user-friendly solutions tailored to both educational and professional settings.


Past Defense Notices

Dates

SAYAK BOSE

Joint Frequency, Timing and Phase Recovery of PAM Based CPM Receivers

When & Where:


246 Nichols

Committee Members:

Erik Perrins, Chair
Shannon Blunt
Sam Shanmugan


Abstract


JILU LI

Mapping of Ice Sheet Deep Layers and Fast Outlet Glaciers with Multi-Channel High-Sensitivity Radar

When & Where:


317 Nichols Hall

Committee Members:

Prasad Gogineni, Chair
Carl Leuschen
Fernando Rodriguez-Morales
Sarah Seguin
David Braaten*

Abstract


ALEXANDER SENF

A Machine Learning Approach to Analyze Cellular Pathways using Microarray Data of D. melanogaster with Profile Hidden Markov Models

When & Where:


246 Nichols Hall

Committee Members:

Xue-Wen Chen, Chair
Arvin Agah
Jun Huan
James Miller
Ilya Vakser*

Abstract


YALING LIU

A Process-Based Search Engine

When & Where:


2001B Eaton Hall

Committee Members:

Arvin Agah, Chair
Xue-Wen Chen
Man Kong
James Miller
Sarah Kieweg*

Abstract


PATRICK CLARK

Identifying Vision Disorders Using Iris Color Analysis

When & Where:


2001B Eaton Hall

Committee Members:

Arvin Agah, Chair
Swapan Chakrabarti
Jerzy Grzymala-Busse


Abstract


JAMES JENSHAK

Transmit Signal Design for Multistatic Radar

When & Where:


246 Nichols Hall

Committee Members:

Jim Stiles, Chair
Chris Allen
Shannon Blunt
Ken Demarest
Tyrone Duncan*

Abstract


CASEY BIGGS

Practical Considerations for Radar Emb edded Communication

When & Where:


246 Nichols Hall

Committee Members:

Shannon Blunt, Chair
Chris Allen
Erik Perrins


Abstract


MARTIN KUEHNHAUSEN

Service Oriented Architecture for Monitoring Cargo in Motion Along Trusted Corridors

When & Where:


250 Nichols Hall

Committee Members:

Victor Frost, Chair
Joseph Evans
Gary Minden


Abstract


MICHAEL WASIKOWSKI

Combating the Class Imbalance Problem in Small Samples and Heterogeneous Data

When & Where:


246 Nichols Hall

Committee Members:

Xue-Wen Chen, Chair
Jun Huan
Brian Potetz


Abstract


MEI LIU

Discovering Domain-Domain Interactions Toward Genome-wide Protein Interaction and Function Predictions

When & Where:


246 Nichols Hall

Committee Members:

Xue-Wen Chen, Chair
Arvin Agah
Jerzy Grzymala-Busse
Jun Huan
Robert Ward*

Abstract