Defense Notices


All students and faculty are welcome to attend the final defense of EECS graduate students completing their M.S. or Ph.D. degrees. Defense notices for M.S./Ph.D. presentations for this year and several previous years are listed below in reverse chronological order.

Students who are nearing the completion of their M.S./Ph.D. research should schedule their final defenses through the EECS graduate office at least THREE WEEKS PRIOR to their presentation date so that there is time to complete the degree requirements check, and post the presentation announcement online.

Upcoming Defense Notices

Muhammad Momin Rahman

Development of a Signal Flow Graph-Based De-Embedding Framework for Broadband Passive Linear Multiport RF & Microwave Networks with Applications to Power Splitters

When & Where:


Nichols Hall, Room 317 (Richard K. Moore Conference Room)

Committee Members:

Carl Leuschen, Chair
Kenneth Demarest
Fernando Rodriguez-Morales


Abstract

Discrete passive components, including resistors, capacitors, inductors, and transformers, are fundamental to broadband 75-Ω radio-frequency (RF) systems, particularly in cable television (CATV) and hybrid fiber-coaxial (HFC) networks. These components are incorporated into power splitters, couplers, power inserters, and amplifiers to achieve desired frequency responses, impedance matching, and signal transmission characteristics. However, their electrical behavior becomes increasingly complex at higher frequencies due to parasitic resistance, inductance, capacitance, electromagnetic coupling, and distributed transmission-line effects. Consequently, accurate broadband characterization is essential for predicting component behavior and developing representative RF circuit models for simulation purposes.

A significant challenge arises when characterizing passive components with limited or unavailable manufacturer specifications, particularly when existing component inventories must be evaluated for broadband applications. Conventional measurement instruments, including digital multimeters, LCR meters, oscilloscopes, and function generators, generally lack the frequency range required for comprehensive RF characterization from 5 MHz to 3 GHz. Vector network analyzers (VNAs) enable complex scattering-parameter measurements across this frequency range; however, the measured response includes contributions from test fixtures, interconnections, and parasitic discontinuities that must be distinguished from the intrinsic response of the device under test (DUT).

This project investigates the development of a signal flow graph (SFG)-based de-embedding framework for broadband passive linear multiport RF networks. The methodology incorporates series-through and shunt-through DUT (CPWG) fixture configurations, conventional Open-Short and Short-Open de-embedding techniques, followed by lumped-element and distributed transmission-line representations of fixture parasitics. Scattering-parameter and ABCD-parameter analysis are employed to characterize fixture responses, while signal flow graph derivations provide a mathematical basis for analyzing interconnected multiport networks. Particular attention is given to fixture asymmetry, impedance discontinuities, and multiple signal propagation paths that complicate the extension of conventional two-port characterization methods to higher-order networks.

Experimental validation is conducted through the characterization of passive components with published impedance and quality-factor characteristics, enabling comparisons between extracted measurements, equivalent-circuit models, and manufacturer reference data. The methodology is subsequently applied to broadband power splitter networks used in CATV/HFC systems to investigate the accuracy and applicability of the proposed multiport de-embedding framework. The project aims to establish a systematic approach to broadband passive component characterization that integrates fixture modeling, network theory, and experimental measurement while reducing dependence on proprietary characterization data.


Fairuz Shadmani Shishir

Efficient and Privacy-Preserving Biomedical AI: From Precision Therapeutics Design to Private Clinical Prediction

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Sumaiya Shomaji, Chair
Tamzidul Hoque
Cuncong Zhong
Bishnu Sarker
Michael Hageman

Abstract

Accurate protein characterization, precision therapeutics design, and privacy-preserving clinical modeling are important challenges in biomedical artificial intelligence (AI). Addressing these challenges requires computational frameworks that are not only accurate and scalable but also capable of supporting reliable decision-making. This dissertation develops efficient, scalable, and reliable computational frameworks across three areas: Computational characterization of proteins, precision therapeutics design, and privacy-aware clinical representation learning. The first part of this dissertation focuses on efficient protein characterization at both the sequence and residue levels. GPCR-SLM, a knowledge-distilled small protein language model, classifies G-protein-coupled receptors (GPCRs), a family targeted by approximately 35% of FDA-approved drugs. Across 86 families, GPCR-SLM achieves 99% accuracy, outperforming BLAST (86.4%) and HMMER (91%), with a 33.5-fold speedup over large protein language models. Extending characterization to the residue level, a protein-metal-ion binding site prediction framework evaluates five protein language models and incorporates positional encoding to capture long-range dependencies. Under 10-fold cross-validation, it achieves a Matthews correlation coefficient of 0.89, with precision, recall, and F1 scores exceeding 95% across six metal ions.

Building on these protein characterization methods, the second part advances precision therapeutics design through uncertainty quantification and generative learning for therapeutic antibodies. NbBayesLM combines protein language model embeddings and physicochemical descriptors in a Bayesian neural network to predict nanobody thermostability. Evaluated on 10,630 VHH sequences, it achieves a mean absolute error of 1.89C and an R2 of 0.67 while estimating epistemic and aleatoric uncertainty to support candidate prioritization. CIgFlow employs classifier-free guidance to generate de novo, antigen-conditioned antibody sequences without fixed scaffolds or paired structural data. Generated sequences achieve a median OASis humanness score of 0.90 and mean predicted local distance difference test (pLDDT) score of 85.0, demonstrating promising novelty and diversity. The third part addresses privacy-aware clinical modeling using electrocardiograms (ECGs), which encode diagnostic information and sensitive demographic attributes. A variational autoencoder with dual discriminators suppresses demographic information while preserving clinically relevant representations.

Collectively, this dissertation advances efficient protein representation learning, computational antibody design, and privacy-preserving clinical AI, contributing methodological foundations for trustworthy biomedical applications.


Arturo Solorio

Performance Analysis of Mismatched Filtering for Stochastic Waveforms

When & Where:


Nichols Hall, Room 246 (Executive Conference Room)

Committee Members:

Patrick McCormick, Chair
Shannon Blunt
Charles Mohr


Abstract

Mismatched filtering (MMF) is a widely used pulse compression technique that reduces cross-correlation sidelobe levels at the cost of some loss in signal-to-noise ratio (SNR). Applying MMF to stochastically generated radar waveforms makes the filter's performance inherently random, which can be problematic if the variability is excessive. As well as the computational cost being relatively high, as per pulse, a new MMF optimization is required. In this thesis, the feasibility of a fixed MMF strategy for stochastic radar waveforms to reduce computational cost is investigated. Two MMF formulations were evaluated, the optimal MMF (Diagonal Loaded Filter) and a projection-based MMF. Both filters were designed to minimize sidelobe energy within specified regions of the Cross-Ambiguity Function (CAF) for Stochastic Waveform Generation (StoWGe) waveforms, and their performance was assessed across multiple time-bandwidth products and sidelobe-regions for two center frequencies, Fc = 30 Ghz and Fc  = 3.5 Ghz. The MMF performance was characterized using SNR loss and sidelobe depth over hundreds of trails. It is observed that the variability in SNR and sidelobe depth decreases as the waveform time-bandwdith product and the sidelobe region targeted for minimization increase, although the Fc = 3.5 GHz cases exhibited a plateau in achievable sidelobe depth. Additional validation using 1000-trail histograms and loop-back testing confirmed the robustness for the fixed MMF approach for higher time-bandwidth product stochastic waveforms. Where, overall, the results demonstrate that a fixed MMF strategy is feasible for stochastic waveforms when the time-bandwdith product and sidelobe region are sufficiently large. Furthermore, the Projection-based MMF provides a suboptimal alternative to the optimal MMF as it achieves comparable MMF performance when constrained to similar SNR-loss and may be desirable when the size of the domination eigenvalues is small relative to the filter length and can be efficiency obtained.


Past Defense Notices

Dates

CAMERON LEWIS

3D Imaging of Ice Sheets

When & Where:


317 Nichols Hall

Committee Members:

Prasad Gogineni, Chair
Chris Allen
Carl Leuschen
Fernando Rodriguez-Morales
Rick Hale

Abstract

Ice shelves are sensitive indicators of climate change and play a critical role in the stability of ice sheets and oceanic currents. Basal melting of ice shelves affect both the mass balance of the ice sheet and the global climate system. This melting and refreezing influences the development of Antarctic Bottom Water, which help drive the oceanic thermohaline circulation, a critical component of the global climate system. Basal melt rates can be estimated through traditional glaciological techniques, relying on conversation of mass. However, this requires accurate knowledge of the ice movement, surface accumulation and ablation, and firn compression. Boreholes can provide direct measurement of melt rates, but only provide point estimates and are difficult and expensive to perform. Satellite altimetry measurements have been heavily relied upon for the past few decades. Thickness and melt rate estimates require the same conservation of mass a priori knowledge, with the additional assumption that the ice shelf is in hydrostatic equilibrium. Even with newly available, ground truthed density and geoid estimates, satellite data derived ice shelf thickness and melt rate estimates suffers from relatively course spatial resolution and interpolation induced error. Non destructive radio echo sounding (RES) measurements from long range airborne platforms provide best solution for fine spatial and temporal resolution over long survey traverses and only require a priori knowledge of firn density and surface accumulation. Previously, RES data derived basal melt rate experiments have been limited to ground based experiments with poor coverage and spatial resolution. To improve upon this, an airborne multi channel wideband radar has been developed for the purpose of imaging shallow ice and ice shelves. A moving platform and cross track antenna array will allow for fine resolution 3 D imaging of basal topography. An initial experiment will use a ground based system to image shallow ice and generate 3 D imagery as a proof of concept. This will then be applied to ice shelf data collected by an airborne system.


TRUC ANH NGUYEN

Transfer Control for Resilient End-to-End Transport

When & Where:


246 Nichols Hall

Committee Members:

James Sterbenz, Chair
Victor Frost
Gary Minden


Abstract

Residing between the network layer and the application layer, the transport 
layer exchanges application data using the services provided by the network. Given the unreliable nature of the underlying network, reliable data transfer has become one of the key requirements for those transport-layer protocols such as TCP. Studying the various mechanisms developed for TCP to increase the correctness of data transmission while fully utilizing the network's bandwidth provides us a strong background for our study and development of our own resilient end-to-end transport protocol. Given this motivation, in this thesis, we study the dierent 
TCP's error control and congestion control techniques by simulating them under dierent network scenarios using ns-3. For error control, we narrow our research to acknowledgement methods such as cumulative ACK - the traditional TCP's way of ACKing, SACK, NAK, and SNACK. The congestion control analysis covers some TCP variants including Tahoe, Reno, NewReno, Vegas, Westwood, Westwood+, and TCP SACK.


CENK SAHIN

On Fundamental Performance Limits of Delay-Sensitive Wireless Communications

When & Where:


246 Nichols Hall

Committee Members:

Erik Perrins, Chair
Shannon Blunt
Victor Frost
Lingjia Liu
Zsolt Talata

Abstract

Mobile traffic is expected to grow at an annual compound rate of 66% in the next 3 years, while among the data types that account for this growth mobile video has the highest growth rate. Since most video applications are delay-sensitive, the delay-sensitive traffic will be the dominant traffic over future wireless communications. Consequently, future mobile wireless systems will face the dual challenge of supporting large traffic volume while providing reliable service for various kinds of delay-sensitive applications (e.g. real-time video, online gaming, and voice-over-IP (VoIP)). Past work on delay-sensitive communications has generally overlooked the physical-layer considerations such as modulation and coding scheme (MCS), probability of decoding error, and coding delay by employing oversimplified models for the physical-layer. With the proposed research we aim to bridge information theory, communication theory, and queueing theory by jointly considering the delay-violation probability and the probability of decoding error to identify the fundamental trade-offs among wireless system parameters such as channel fading speed, average received signal-to-noise ratio (SNR), MCS, and user perceived quality of service. We will model the underlying wireless channel by a finite-state Markov chain, use channnel dispersion to track the probability of decoding error and the coding delay for a given MCS, and focus on the asymptotic decay rate of buffer occupancy for queueing delay analysis. The proposed work will be used to obtain fundamental bounds on the performance of queued systems over wireless communication channels.


GHAITH SHABSIGH

LPI Performance of an Ad-Hoc Covert System Exploiting Wideband Wireless Mobile Networks

When & Where:


246 Nichols Hall

Committee Members:

Victor Frost, Chair
Chris Allen
Lingjia Liu
Erik Perrins
Tyrone Duncan

Abstract

The high level of functionality and flexibility of modern wideband wireless networks, LTE and WiMAX, have made them the preferred technology for providing mobile internet connectivity. The high performance of these systems comes from adopting several innovative techniques such as Orthogonal Frequency Division Multiplexing (OFDM), Automatic Modulation and Coding (AMC), and Hybrid Automatic Repeat Request (HARQ). However, this flexibility also opens the door for network exploitation by other ad-hoc networks, like Device-to-Device technology, or covert systems. In this work effort, we provide the theoretical foundation for a new ad-hoc wireless covert system that hides its transmission in the RF spectrum of an OFDM-based wideband network (Target Network), like LTE. The first part of this effort will focus on designing the covert waveform to achieve a low probability of detection (LPD). Next, we compare the performance of several available detection methods in detecting the covert transmission, and propose a detection algorithm that would represent a worst case scenario for the covert system. Finally, we optimize the performance of the covert system in terms of its throughput, transmission power, and interference on/from the target network.


MOHAMMED ALENAZI

Network Resilience Improvement and Evaluation Using Link Additions

When & Where:


246 Nichols Hall

Committee Members:

James Sterbenz, Chair
Victor Frost
Lingjia Liu
Bo Luo
Tyrone Duncan

Abstract

Computer networks are prone to targeted attacks and natural disasters that could disrupt its normal operation and services. Adding links to form a full mesh yields the most resilient network but it incurs unfeasible high cost. In this research, we investigate the resilience improvement of real-world network via adding a cost-efficient set of links. Adding a set of link to get optimal solution using exhaustive search is impracticable given the size of communication network graphs. Using a greedy algorithm, a feasible solution is obtained by adding a set of links to improve network connectivity by increasing a graph robustness metric such as algebraic connectivity or total path diversity. We use a graph metric called flow robustness as a measure for network resilience. To evaluate the improved networks, we apply three centrality-based attacks and study their resilience. The flow robustness results of the attacks show that the improved networks are more resilient than the non-improved networks.


ASHWINI SHIKARIPUR NADIG

Statitistical Approaches to Inferring Object Shape from Single Images

When & Where:


2001B Eaton Hall

Committee Members:

Bo Luo, Chair
Brian Potetz
Luke Huan
Jim Miller
Paul Selden

Abstract

Depth inference is a fundamental problem of computer vision with a broad range of potential applications. Monocular depth inference techniques, particularly shape from shading dates back to as early as the 40's when it was first used to study the shape of the lunar surface. Since then there has been ample research to develop depth inference algorithms using monocular cues. Most of these are based on physical models of image formation and rely on a number of simplifying assumptions that do not hold for real world and natural imagery. Very few make use of the rich statistical information contained in real world images and their 3D information. There have been a few notable exceptions though. The study of statistics of natural scenes has been concentrated on outdoor natural scenes which are cluttered. Statistics of scenes of single objects has been less studied, but is an essential part of daily human interaction with the environment. This thesis focuses on studying the statistical properties of single objects and their 3D imagery, uncovering some interesting trends, which can benefit shape inference techniques. I acquired two databases: Single Object Range and HDR (SORH) and the Eton Myers Database of single objects, including laser-acquired depth, binocular stereo, photometric stereo and High Dynamic Range (HDR) photography. The fractal structure of natural images was previously well known, and thought to be a universal property. However, my research showed that the fractal structure of single objects and surfaces is governed by a wholly different set of rules. Classical computer vision problems of binocular and multi-view stereo, photometric stereo, shape from shading, structure from motion, and others, all rely on accurate and complete models of which 3D shapes and textures are plausible in nature, to avoid producing unlikely outputs. Bayesian approaches are common for these problems, and hopefully the findings on the statistics of the shape of single objects from this work and others will both inform new and more accurate Bayesian priors on shape, and also enable more efficient probabilistic inference procedures.


STEVE PENNINGTON

Spectrum Coverage Estimation Using Large Scale Measurements

When & Where:


246 Nichols Hall

Committee Members:

Joseph Evans, Chair
Arvin Agah
Victor Frost
Gary Minden
Ronald Aust

Abstract

The work presented in this thesis explores the use of geographic data and geostatistical methods to estimate path loss for cognitive radio networks. Path loss models typically employed in this scenario use a general terrain type (i.e., urban, suburban, or rural) and possibly a digital elevation model to predict excess path loss over the free space model. Additional descriptive knowledge of the local environment can be used to make more accurate path loss predictions. This research focuses on the use of visible imagery, digital elevation models, and terrain classification systems for predicting localized propagation characteristics. A low-cost data collection platform was created and used to generate a sufficiently large spectrum measurement set for machine learning. A series of path loss models were fitted to the data using linear and nonlinear methods. These models were then used to create a radio environment map depicting estimated signal strength. All of the models created have good cross-validated prediction results when compared to existing path loss models, although some of the more flexible models had a tendency to overfit the data. A number of geostatistical models were fitted on the data as well. 
These models have the advantage of not requiring the transmitter location in order to create a model. The geostatistical models performed very well when given a sufficient density of observations but were not able to generalize as well as some of the regression models. An analysis of the geographical data sets indicated that each had a significant measurable effect on path loss estimation, with the medium resolution imagery and elevation data providing the greatest increase in accuracy. Finally, these models were compared to number of existing path loss models, demonstrating a gain in usable spectrum for cognitive radio network use.


BENJAMIN EWY

Collaborative Approaches to Probabilistic Reasoning in Network Management

When & Where:


246 Nichols Hall

Committee Members:

Joseph Evans, Chair
Arvin Agah
Victor Frost
Gary Minden
Bozenna Pasik-Duncan

Abstract

Tactical networks, networks designed to facilitate command and control capabilities for militaries, have key attributes that differ from the commercial Internet. Characterizing, modeling, and ex- ploiting our understanding of these differences is the focus of this research. 
The differences between tactical and commercial networks can be found primarily in the areas of access bandwidth, access diversity, access latency, core latency, subnet distribution, and network infrastructure. In this work we characterize and model these differences. These key attributes affect research into issues such as peer-to-peer protocols, service discovery, and server selection among others, as well as the deployment of services and systems in tactical networks. Researchers traditionally struggle with measuring, analyzing, or testing new ideas on tactical networks due to a lack of direct access, and thus this characterization is crucial to evolving this research field. 
In this work we develop a topology generator that creates realistic tactical networks that can be visualized, analyzed, and emulated. 
Topological features including geographically constrained line of sight networks, high density low bandwidth satellite networks, and the latest high bandwidth on- the-move networks are captured. All of these topological features can be mixed to create realistic networks for many different tactical scenarios. A web based visualization tool is developed, as well as the ability to export topologies to the Mininet network virtualization environment. 
Finally, state-of-the-art server selection algorithms are reviewed and found to perform poorly for tactical networks. We develop a collaborative algorithm tailored to the attributes of tactical networks, and utilize our generated networks to assess the algorithm, finding a reduction in utilized bandwidth and a significant reduction in client to server latency as key improvements.


MEENAKSHI MISHRA

Task Relationship Modeling in Multitask Learning with Applications to Computational Toxicity

When & Where:


246 Nichols Hall

Committee Members:

Luke Huan, Chair
Arvin Agah
Swapan Chakrabarti
Ron Hui
Zhou Wang

Abstract

Multitask Learning is a learning framework which explores the concept of sharing training information among multiple related tasks to improve the generalization error of each task. The benefits of multitask learning have been shown both empirically and theoretically. There are a number of fields that benefit from multitask learning, including toxicology. However, the current multitask learning algorithms make a very important key assumption that all the tasks are related to each other in a similar fashion in multitask learning. The users often do not have the knowledge of which tasks are related and train all tasks together. This results in sharing of training information even among the unrelated tasks. Training unrelated tasks together can cause a negative transfer and deteriorate the performance of multitask learning. For example, consider the case of predicting in vivo toxicity of chemicals at various endpoints from the chemical structure. Toxicity at all the endpoints are not related. Since, biological networks are highly complex, it is also not possible to predetermine which endpoints are related. Thus, training all the endpoints together may cause a negative effect on the overall performance. This proposal aims at developing algorithms which make use of task relationship models to further improve the generalization error and prevent transfer of information among the unrelated tasks. The algorithms proposed here either learn the task relationships or utilize the known task relationships in the learning framework. Further, these algorithms will be utilized to predict toxicity of chemicals at various endpoints using the chemical structures and the results of multiple in vitro assays performed on these chemicals.


YINGYING MA

A Comparison of Two Discretization Options of the MLEM2 Algorithm

When & Where:


2001B Eaton Hall

Committee Members:

Jerzy Grzymala-Busse, Chair
Luke Huan
Prasad Kulkarni


Abstract

A rule set is a popular symbolic representation of knowledge derived from 
data. A rule induction is an important technique of data mining or machine 
learning. Many rule induction algorithms are widely used, such as LEM1, LEM2 and MLEM2. Some of these algorithms perform better on special data, e. g., on inconsistent data set or data sets with missing attribute values. This work discusses basic ideas of the MLEM2 algorithm, especially, how it handles data sets with numeric attribute values. Additionally, a comparison of the performance of different discretization options of the MLEM2 algorithm is also included.