Defense Notices


All students and faculty are welcome to attend the final defense of EECS graduate students completing their M.S. or Ph.D. degrees. Defense notices for M.S./Ph.D. presentations for this year and several previous years are listed below in reverse chronological order.

Students who are nearing the completion of their M.S./Ph.D. research should schedule their final defenses through the EECS graduate office at least THREE WEEKS PRIOR to their presentation date so that there is time to complete the degree requirements check, and post the presentation announcement online.

Upcoming Defense Notices

Muhammad Momin Rahman

Development of a Signal Flow Graph-Based De-Embedding Framework for Broadband Passive Linear Multiport RF & Microwave Networks with Applications to Power Splitters

When & Where:


Nichols Hall, Room 317 (Richard K. Moore Conference Room)

Committee Members:

Carl Leuschen, Chair
Kenneth Demarest
Fernando Rodriguez-Morales


Abstract

Discrete passive components, including resistors, capacitors, inductors, and transformers, are fundamental to broadband 75-Ω radio-frequency (RF) systems, particularly in cable television (CATV) and hybrid fiber-coaxial (HFC) networks. These components are incorporated into power splitters, couplers, power inserters, and amplifiers to achieve desired frequency responses, impedance matching, and signal transmission characteristics. However, their electrical behavior becomes increasingly complex at higher frequencies due to parasitic resistance, inductance, capacitance, electromagnetic coupling, and distributed transmission-line effects. Consequently, accurate broadband characterization is essential for predicting component behavior and developing representative RF circuit models for simulation purposes.

A significant challenge arises when characterizing passive components with limited or unavailable manufacturer specifications, particularly when existing component inventories must be evaluated for broadband applications. Conventional measurement instruments, including digital multimeters, LCR meters, oscilloscopes, and function generators, generally lack the frequency range required for comprehensive RF characterization from 5 MHz to 3 GHz. Vector network analyzers (VNAs) enable complex scattering-parameter measurements across this frequency range; however, the measured response includes contributions from test fixtures, interconnections, and parasitic discontinuities that must be distinguished from the intrinsic response of the device under test (DUT).

This project investigates the development of a signal flow graph (SFG)-based de-embedding framework for broadband passive linear multiport RF networks. The methodology incorporates series-through and shunt-through DUT (CPWG) fixture configurations, conventional Open-Short and Short-Open de-embedding techniques, followed by lumped-element and distributed transmission-line representations of fixture parasitics. Scattering-parameter and ABCD-parameter analysis are employed to characterize fixture responses, while signal flow graph derivations provide a mathematical basis for analyzing interconnected multiport networks. Particular attention is given to fixture asymmetry, impedance discontinuities, and multiple signal propagation paths that complicate the extension of conventional two-port characterization methods to higher-order networks.

Experimental validation is conducted through the characterization of passive components with published impedance and quality-factor characteristics, enabling comparisons between extracted measurements, equivalent-circuit models, and manufacturer reference data. The methodology is subsequently applied to broadband power splitter networks used in CATV/HFC systems to investigate the accuracy and applicability of the proposed multiport de-embedding framework. The project aims to establish a systematic approach to broadband passive component characterization that integrates fixture modeling, network theory, and experimental measurement while reducing dependence on proprietary characterization data.


Fairuz Shadmani Shishir

Efficient and Privacy-Preserving Biomedical AI: From Precision Therapeutics Design to Private Clinical Prediction

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Sumaiya Shomaji, Chair
Tamzidul Hoque
Cuncong Zhong
Bishnu Sarker
Michael Hageman

Abstract

Accurate protein characterization, precision therapeutics design, and privacy-preserving clinical modeling are important challenges in biomedical artificial intelligence (AI). Addressing these challenges requires computational frameworks that are not only accurate and scalable but also capable of supporting reliable decision-making. This dissertation develops efficient, scalable, and reliable computational frameworks across three areas: Computational characterization of proteins, precision therapeutics design, and privacy-aware clinical representation learning. The first part of this dissertation focuses on efficient protein characterization at both the sequence and residue levels. GPCR-SLM, a knowledge-distilled small protein language model, classifies G-protein-coupled receptors (GPCRs), a family targeted by approximately 35% of FDA-approved drugs. Across 86 families, GPCR-SLM achieves 99% accuracy, outperforming BLAST (86.4%) and HMMER (91%), with a 33.5-fold speedup over large protein language models. Extending characterization to the residue level, a protein-metal-ion binding site prediction framework evaluates five protein language models and incorporates positional encoding to capture long-range dependencies. Under 10-fold cross-validation, it achieves a Matthews correlation coefficient of 0.89, with precision, recall, and F1 scores exceeding 95% across six metal ions.

Building on these protein characterization methods, the second part advances precision therapeutics design through uncertainty quantification and generative learning for therapeutic antibodies. NbBayesLM combines protein language model embeddings and physicochemical descriptors in a Bayesian neural network to predict nanobody thermostability. Evaluated on 10,630 VHH sequences, it achieves a mean absolute error of 1.89C and an R2 of 0.67 while estimating epistemic and aleatoric uncertainty to support candidate prioritization. CIgFlow employs classifier-free guidance to generate de novo, antigen-conditioned antibody sequences without fixed scaffolds or paired structural data. Generated sequences achieve a median OASis humanness score of 0.90 and mean predicted local distance difference test (pLDDT) score of 85.0, demonstrating promising novelty and diversity. The third part addresses privacy-aware clinical modeling using electrocardiograms (ECGs), which encode diagnostic information and sensitive demographic attributes. A variational autoencoder with dual discriminators suppresses demographic information while preserving clinically relevant representations.

Collectively, this dissertation advances efficient protein representation learning, computational antibody design, and privacy-preserving clinical AI, contributing methodological foundations for trustworthy biomedical applications.


Arturo Solorio

Performance Analysis of Mismatched Filtering for Stochastic Waveforms

When & Where:


Nichols Hall, Room 246 (Executive Conference Room)

Committee Members:

Patrick McCormick, Chair
Shannon Blunt
Charles Mohr


Abstract

Mismatched filtering (MMF) is a widely used pulse compression technique that reduces cross-correlation sidelobe levels at the cost of some loss in signal-to-noise ratio (SNR). Applying MMF to stochastically generated radar waveforms makes the filter's performance inherently random, which can be problematic if the variability is excessive. As well as the computational cost being relatively high, as per pulse, a new MMF optimization is required. In this thesis, the feasibility of a fixed MMF strategy for stochastic radar waveforms to reduce computational cost is investigated. Two MMF formulations were evaluated, the optimal MMF (Diagonal Loaded Filter) and a projection-based MMF. Both filters were designed to minimize sidelobe energy within specified regions of the Cross-Ambiguity Function (CAF) for Stochastic Waveform Generation (StoWGe) waveforms, and their performance was assessed across multiple time-bandwidth products and sidelobe-regions for two center frequencies, Fc = 30 Ghz and Fc  = 3.5 Ghz. The MMF performance was characterized using SNR loss and sidelobe depth over hundreds of trails. It is observed that the variability in SNR and sidelobe depth decreases as the waveform time-bandwdith product and the sidelobe region targeted for minimization increase, although the Fc = 3.5 GHz cases exhibited a plateau in achievable sidelobe depth. Additional validation using 1000-trail histograms and loop-back testing confirmed the robustness for the fixed MMF approach for higher time-bandwidth product stochastic waveforms. Where, overall, the results demonstrate that a fixed MMF strategy is feasible for stochastic waveforms when the time-bandwdith product and sidelobe region are sufficiently large. Furthermore, the Projection-based MMF provides a suboptimal alternative to the optimal MMF as it achieves comparable MMF performance when constrained to similar SNR-loss and may be desirable when the size of the domination eigenvalues is small relative to the filter length and can be efficiency obtained.


Past Defense Notices

Dates

RANJITH KRISHNAN

The Xen Hypervisor : Construction of a Test Environment and Validation by Performing Performance Evaluation of Native Linux versus Xen Guests

When & Where:


246 Nichols Hall

Committee Members:

Prasad Kulkarni, Chair
Bo Luo
Heechul Yun


Abstract

Modern computers are powerful enough to comfortably support running multiple Operating Systems at the same time. Enabling this is the Xen hypervisor, an open-source tool which is one of most widely used System Virtualization solutions in the market. Xen enables Guest Virtual Machines to run at near native speeds by using a concept called Paravirtualization. The primary goal of this project is to construct a development/test environment where we can investigate the different types of virtualization Xen supports. We start on a base of Fedora onto which Xen is built and installed. Once Xen is running, we configure both Paravirtualized and Hardware Virtualized Guests. 
The second goal of the project is to validate the environment constructed by doing a performance evaluation of constructed test environment. Various performance benchmarks are run on native Linux, Xen Host and the two important types of Xen Guests. As expected, our results show that the performance of the Xen guest machines are close to native Linux. We also see proof of why virtualization-aware Paravirtualization performs better than Hardware Virtualization which runs without any knowledge of the underlying virtualization infrastructure. 


JUSTIN METCALF

Signal Processing for Non-Gaussian Statistics: Clutter Distribution Identification and Adaptive Threshold Estimation

When & Where:


129 Nichols

Committee Members:

Shannon Blunt, Chair
Luke Huan
Lingjia Liu
Jim Stiles
Tyrone Duncan

Abstract

We examine the problem of determining a decision threshold for the binary hypothesis test that naturally arises when a radar system must decide if there is a target present in a range cell under test. Modern radar systems require predictable, low, constant rates of false alarm (i.e. when unwanted noise and clutter returns are mistaken for a target). Measured clutter returns have often been fitted to heavy tailed, non-Gaussian distributions. The heavy tails on these distributions cause an unacceptable rise in the number of false alarms. We use the class of spherically invariant random vectors (SIRVs) to model clutter returns. SIRVs arise from a phenomenological consideration of the radar sensing problem, and include both the Gaussian distribution and most commonly reported non-Gaussian clutter distributions (e.g. K distribution, Weibull distribution). 

We propose an extension of a prior technique called the Ozturk algorithm. The Ozturk algorithm generates a graphical library of points corresponding to known SIRV distributions. These points are generated from linked vectors whose magnitude is derived from the order statistics of the SIRV distributions. Measured data is then compared to the library and a distribution is chosen that best approximates the measured data. Our extension introduces a framework of weighting functions and examines both a distribution classification technique as well as a method of determining an adaptive threshold in data that may or may not belong to a known distribution. The extensions are then compared to neural networking techniques. Special attention is paid to producing a robust, adaptive estimation of the detection threshold. Finally, divergence measures of SIRVs are examined. 


ALHANOOF ALTHNIAN

Evolutionary Learning of Goal-Oriented Communication Strategies in Multi-Agent Systems

When & Where:


246 Nichols Hall

Committee Members:

Arvin Agah, Chair
Jerzy Grzymala-Busse
Prasad Kulkarni
Bo Luo
Sara Kieweg

Abstract

Multi-agent systems are a common paradigm for building distributed systems in different domains such as networking, health care, swarm sensing, robotics, and transportation. Performance goals can vary from one application to the other according to the domain's specifications and requirements. Yet, performance goals can vary over the course of task execution. For example, agents may initially be interested in completing the task as fast as possible, but if their energy hits a specific level while still working on the task, they might, then need to switch their goal to minimize energy consumption. Previous studies in multi-agent systems have observed that varying the type of information that agents communicate, such as goals and beliefs, has a significant impact on the performance of the system with respect to different, usually conflicting, performance metrics, such as speed of solution, communication efficiency, and travel distance/cost. Therefore, when designing a communication strategy for a multi-agent system, it is unlikely that one strategy can perform well with respect to all of performance metrics. Yet, it is not clear in advance, which strategy or communication decisions will be the best with respect to each metric. Previous approaches to communication decisions in multi-agent systems either manually design a single/multiple fixed communication strategies, extend agents' capabilities and use heuristics, or allow learning a strategy with respect to a single predetermined performance goal. To address this issue, this research introduces goal-oriented communication strategy, where communication decisions are determined based on the desired performance goal. This work proposes an evolutionary approach for learning a goal-oriented communication strategy in multi-agent systems. The approach enables learning an effective communication strategy with respect to simple or complex measurable performance goals. The learned strategy will determine what, when, and to whom the information should be communicated during the course of task execution.


JASON GEVARGIZIAN

Executables from Program Slices for Java Programs

When & Where:


250 Nichols Hall

Committee Members:

Prasad Kulkarni, Chair
Perry Alexander
Andy Gill


Abstract

Program slicing is a popular program decomposition and analysis technique 
that extracts only those program statements that are relevant to particular points 
of interest. Executable slices are program slices that are independently executable 
and that correctly compute the values in the slicing criteria. Executable slices 
can be used during debugging and to improve program performance through 
parallelization of partially overlapping slices. 

While program slicing and the construction of executable slicers has been 
studied in the past, there are few acceptable executable slicers available, 
even for popular languages such as Java. 
In this work, we provide an extension to the T. J. Watson Libraries for 
Analysis (WALA), an open-source Java application static analysis suite, to 
generate fully executable slices. 

We analyze the problem of executable slice generation in the context 
of the capabilities provided and algorithms used by the WALA library. 
We then employ this understanding to augment the existing WALA static SSA slicer 
to efficiently track non-SSA datapendence, and couple this component with 
our exectuable slicer backend. 
We evaluate our slicer extension and find that it produces accurate 
exectuable slices for all programs that fall within the limitations of the 
WALA SSA slicer itself. 
Our extension to generate executable program slices facilitates one of the 
requirements of our larger project for a Java application automatic 
partitioner and parallelizer.


DAVID HARVIE

Targeted Scrum: Software Development Inspired by Mission Command

When & Where:


246 Nichols Hall

Committee Members:

Arvin Agah, Chair
Bo Luo
James Miller
Hossein Saiedian
Prajna Dhar

Abstract

Software engineering and mission command are two separate but similar fields, as both are instances of complex problem solving in environments with ever changing requirements. Both fields have followed similar paths from using industrial age decomposition to deal with large problems to striving to be more agile and resilient. Our research hypothesis is that modifications to agile software development based on inspirations from mission command can improve the software engineering process in terms of planning, prioritizing, and communication of software requirements and progress, as well as improving the overall software product. Targeted Scrum is a modification of Traditional Scrum based on three inspirations from Mission Command: End State, Line of Effort, and Targeting. These inspirations have led to the introduction of the Product Design Meeting and modifications of some current Scrum meetings and artifacts. We tested our research hypothesis using a semester-long undergraduate level software engineering class. Students in teams developed two software projects, one using Traditional Scrum and the other using Targeted Scrum. We then assessed how well both methodologies assisted the software development teams in planning and developing the software architecture, prioritizing requirements, and communicating progress. We also evaluated the software product produced by both methodologies. It was determined that Targeted Scrum did better in assisting the software development teams in the planning and prioritization of the requirements. However, Targeted Scrum had a negligible effect on improving the software development teams’ external and internal communications. Finally, Targeted Scrum did not have an impact on the product quality by the top performing and worst performing teams. Targeted Scrum did assist the product quality of the teams in the middle of the performance spectrum.

 

 


BRAD TORRENCE

The Life Changing HERMIT: A Case Study of the Worker/Wrapper Transformation

When & Where:


2001B Eaton Hall

Committee Members:

Andy Gill, Chair
Perry Alexander
Prasad Kulkarni


Abstract

In software engineering, altering a program's original implementation disconnects it from the model that produced it. Reconnecting the model and new implementations must be done in a way that does not decrease confidence in the design's correctness and performance. This thesis demonstrates that it is possible, in practice, to connect the model of Conway’s Game of Life with new implementations, using the worker/wrapper transformation theory. This connection allows development to continue without the sacrifice of re-implementation. 

HERMIT is a tool that allows programs implemented in Haskell to be transformed during the compilation process, and has features capable of performing worker/wrapper transformations. Specifically in these experiments, HERMIT is used to apply syntax transformations to replace Life's linked-list based implementation with one that uses other data structures in an effort to explore alternative implementations and improve overall performance. 

Previous work has successfully performed the worker/wrapper conversion on an individual function using HERMIT. This thesis presents the first time that a programmer-directed worker/wrapper transformation has been attempted on an entire program. From this experiment, substantial observations have been made. These observations have led to proposed improvements to the HERMIT system, as well as a formal approach to the worker/wrapper transformation process in general.


RAMA KRISHNAMOORTHY

Adding Collision Detection to Functional Active Programming

When & Where:


2001B Eaton Hall

Committee Members:

Andy Gill, Chair
Luke Huan
Prasad Kulkarni


Abstract

Active is a Haskell library for creating animations driven by time. The key concept is that every animation has its own starting and ending time and the motion of each element can be defined as a function of time. This underlying idea is intuitive and simple enough for the users to understand that it has created a space for simple animations, called “Functional Active programming”. Although there are many FRP libraries available, FRP libraries are often challenging to use for simple animations. 
In this project, we have added some reactive features to the Active library as an attempt to enhance the active programming space without complicating the underlying principles. This will let Active elements to detect collisions, or a mouse click event, and change their behavior accordingly. Having built-in reactive features equips the Active programmers with extra tools at their disposal and significantly reduces the efforts needed to code such reactions. These reactive features have been implemented on top of the Blank Canvas. 


MAHMOOD HAMEED

Nonlinear Mixing in Optical Multicarrier Systems

When & Where:


246 Nichols Hall

Committee Members:

Ron Hui, Chair
Shannon Blunt
Erik Perrins
Alessandro Salandrino
Tyrone Duncan

Abstract

Efficient use of the vast spectrum offered by fiber-optic links by an end user with relatively small bandwidth requirement is possible by partitioning a high speed signal in a wavelength channel into multiple low-rate subcarriers. Multi-carrier systems not only ensure optimized use of optical and electrical components, but also tolerate transmission impairments. The purpose of this research is to theoretically and experimentally study mixing among subcarriers in Radio-Over-Fiber (RoF) and direct detections systems. 
For an OFDM-RoF system, we present a novel technique that minimizes the RF domain signal-signal beat interference, relaxes the phase noise requirement on the RF carrier, realizes the full potential of the optical heterodyne technique, and increases the performance-to-cost ratio of RoF systems. We demonstrate a RoF network that shares the same RF carrier for both downlink and uplink, avoiding the need of an additional RF oscillator in the customer unit. 
For direct detection systems, we propose theoretical and experimental investigation of impact of semiconductor optical amplifier nonlinearities on Compatible-SSB signals. As preliminary work, we present experimental comparison of performance degradation of coherent optical OFDM and single carrier Nyquist pulse modulated systems in a nonlinear environment. Furthermore, analysis of distribution properties of optical phases driving a dual-drive MZM and their dependence on scaling factor are proposed for Compatible-SSB modulation format through simulations and experimental results. An optimum scaling factor needs to be found that minimizes residual sideband and signal-signal beat interference in such systems. 


JAY FULLER

Scalable, Synchronous, Multichannel DDS System for Radar Applications

When & Where:


129 Nichols

Committee Members:

Carl Leuschen, Chair
Prasad Gogineni
Fernando Rodriguez-Morales
Zongbo Wang

Abstract

The WFG2013 project uses Analog Devices AD9915 DDS ICs at up to 2.5 GS/s as basic building blocks for a scalable,synchronous, multichannel DDS system. Four DDS ICs are installed on a daughterboard with an Altera Cyclone 5E FPGA as a controller. The daughterboard can run standalone (Solo), in conjunction with another daughterboard (Duo), or N daughterboards surfing a motherboard (Mucho). 

Synchronization between configured DDS ICs is achieved via the on-chip SYNC-IN and SYNC-OUT signals. The master DDS (only one per configuration) generates the SYNC_OUT signal, which is distributed to the SYNC_IN pins on all DDS ICs, including the master. The synchronization signal distribution network was designed to minimize skew such that the SYNC_IN signal reaches the all DDSs at virtually the same time. Even if some skew appears, the AD9915's SYNC_IN and SYNC_OUT signals have adjustable delay. The SYNC_IN signal causes the DDSs to assume a known state. Because all of the DDSs reach the same state at the same time, they are, by definition synchronized.


MOIZ VIRANI

Implementing Websockets in Kansas-Comet for Real-Time Communication in Applications Like Blank-Canvas

When & Where:


1136 Learned Hall

Committee Members:

Andy Gill, Chair
Perry Alexander
Prasad Kulkarni


Abstract

Websockets is a protocol that provides a full-duplex communication channel over a single TCP connection between a web server and web client. Kansas-comet is long polling solution that allows web servers written in the functional programming language Haskell to push data to browser clients. Implementing kansas-comet with websockets enables pushing data from web servers to clients with reduced data loads and network latency, which helps in scaling web applications. Other applications, like the graphics library blank canvas, use kansas-comet, so improving kansas-comet also improves these applications as well. 

In this project, we add websockets to kansas-comet for the sake of improving client-server communications by providing a modern full duplex communication channel. Modern web browsers support the websocket protocol but it is important for kansas-comet to also provide backward compatibility. So, the new kansas-comet now implements a mechanism that falls back to long polling strategy when browser does not support websocket or when applications using kansas comet does not implement websockets. We use JavaScript and the kansas-comet JavaScript library on client browsers, and we use websocket, wai-websockets and warp libraries on the server side to implement websockets in kansas comet.