Defense Notices
All students and faculty are welcome to attend the final defense of EECS graduate students completing their M.S. or Ph.D. degrees. Defense notices for M.S./Ph.D. presentations for this year and several previous years are listed below in reverse chronological order.
Students who are nearing the completion of their M.S./Ph.D. research should schedule their final defenses through the EECS graduate office at least THREE WEEKS PRIOR to their presentation date so that there is time to complete the degree requirements check, and post the presentation announcement online.
Upcoming Defense Notices
Muhammad Momin Rahman
Development of a Signal Flow Graph-Based De-Embedding Framework for Broadband Passive Linear Multiport RF & Microwave Networks with Applications to Power SplittersWhen & Where:
Nichols Hall, Room 317 (Richard K. Moore Conference Room)
Committee Members:
Carl Leuschen, ChairKenneth Demarest
Fernando Rodriguez-Morales
Abstract
Discrete passive components, including resistors, capacitors, inductors, and transformers, are fundamental to broadband 75-Ω radio-frequency (RF) systems, particularly in cable television (CATV) and hybrid fiber-coaxial (HFC) networks. These components are incorporated into power splitters, couplers, power inserters, and amplifiers to achieve desired frequency responses, impedance matching, and signal transmission characteristics. However, their electrical behavior becomes increasingly complex at higher frequencies due to parasitic resistance, inductance, capacitance, electromagnetic coupling, and distributed transmission-line effects. Consequently, accurate broadband characterization is essential for predicting component behavior and developing representative RF circuit models for simulation purposes.
A significant challenge arises when characterizing passive components with limited or unavailable manufacturer specifications, particularly when existing component inventories must be evaluated for broadband applications. Conventional measurement instruments, including digital multimeters, LCR meters, oscilloscopes, and function generators, generally lack the frequency range required for comprehensive RF characterization from 5 MHz to 3 GHz. Vector network analyzers (VNAs) enable complex scattering-parameter measurements across this frequency range; however, the measured response includes contributions from test fixtures, interconnections, and parasitic discontinuities that must be distinguished from the intrinsic response of the device under test (DUT).
This project investigates the development of a signal flow graph (SFG)-based de-embedding framework for broadband passive linear multiport RF networks. The methodology incorporates series-through and shunt-through DUT (CPWG) fixture configurations, conventional Open-Short and Short-Open de-embedding techniques, followed by lumped-element and distributed transmission-line representations of fixture parasitics. Scattering-parameter and ABCD-parameter analysis are employed to characterize fixture responses, while signal flow graph derivations provide a mathematical basis for analyzing interconnected multiport networks. Particular attention is given to fixture asymmetry, impedance discontinuities, and multiple signal propagation paths that complicate the extension of conventional two-port characterization methods to higher-order networks.
Experimental validation is conducted through the characterization of passive components with published impedance and quality-factor characteristics, enabling comparisons between extracted measurements, equivalent-circuit models, and manufacturer reference data. The methodology is subsequently applied to broadband power splitter networks used in CATV/HFC systems to investigate the accuracy and applicability of the proposed multiport de-embedding framework. The project aims to establish a systematic approach to broadband passive component characterization that integrates fixture modeling, network theory, and experimental measurement while reducing dependence on proprietary characterization data.
Fairuz Shadmani Shishir
Efficient and Privacy-Preserving Biomedical AI: From Precision Therapeutics Design to Private Clinical PredictionWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
Sumaiya Shomaji, ChairTamzidul Hoque
Cuncong Zhong
Bishnu Sarker
Michael Hageman
Abstract
Accurate protein characterization, precision therapeutics design, and privacy-preserving clinical modeling are important challenges in biomedical artificial intelligence (AI). Addressing these challenges requires computational frameworks that are not only accurate and scalable but also capable of supporting reliable decision-making. This dissertation develops efficient, scalable, and reliable computational frameworks across three areas: Computational characterization of proteins, precision therapeutics design, and privacy-aware clinical representation learning. The first part of this dissertation focuses on efficient protein characterization at both the sequence and residue levels. GPCR-SLM, a knowledge-distilled small protein language model, classifies G-protein-coupled receptors (GPCRs), a family targeted by approximately 35% of FDA-approved drugs. Across 86 families, GPCR-SLM achieves 99% accuracy, outperforming BLAST (86.4%) and HMMER (91%), with a 33.5-fold speedup over large protein language models. Extending characterization to the residue level, a protein-metal-ion binding site prediction framework evaluates five protein language models and incorporates positional encoding to capture long-range dependencies. Under 10-fold cross-validation, it achieves a Matthews correlation coefficient of 0.89, with precision, recall, and F1 scores exceeding 95% across six metal ions.
Building on these protein characterization methods, the second part advances precision therapeutics design through uncertainty quantification and generative learning for therapeutic antibodies. NbBayesLM combines protein language model embeddings and physicochemical descriptors in a Bayesian neural network to predict nanobody thermostability. Evaluated on 10,630 VHH sequences, it achieves a mean absolute error of 1.89C and an R2 of 0.67 while estimating epistemic and aleatoric uncertainty to support candidate prioritization. CIgFlow employs classifier-free guidance to generate de novo, antigen-conditioned antibody sequences without fixed scaffolds or paired structural data. Generated sequences achieve a median OASis humanness score of 0.90 and mean predicted local distance difference test (pLDDT) score of 85.0, demonstrating promising novelty and diversity. The third part addresses privacy-aware clinical modeling using electrocardiograms (ECGs), which encode diagnostic information and sensitive demographic attributes. A variational autoencoder with dual discriminators suppresses demographic information while preserving clinically relevant representations.
Collectively, this dissertation advances efficient protein representation learning, computational antibody design, and privacy-preserving clinical AI, contributing methodological foundations for trustworthy biomedical applications.
Arturo Solorio
Performance Analysis of Mismatched Filtering for Stochastic WaveformsWhen & Where:
Nichols Hall, Room 246 (Executive Conference Room)
Committee Members:
Patrick McCormick, ChairShannon Blunt
Charles Mohr
Abstract
Mismatched filtering (MMF) is a widely used pulse compression technique that reduces cross-correlation sidelobe levels at the cost of some loss in signal-to-noise ratio (SNR). Applying MMF to stochastically generated radar waveforms makes the filter's performance inherently random, which can be problematic if the variability is excessive. As well as the computational cost being relatively high, as per pulse, a new MMF optimization is required. In this thesis, the feasibility of a fixed MMF strategy for stochastic radar waveforms to reduce computational cost is investigated. Two MMF formulations were evaluated, the optimal MMF (Diagonal Loaded Filter) and a projection-based MMF. Both filters were designed to minimize sidelobe energy within specified regions of the Cross-Ambiguity Function (CAF) for Stochastic Waveform Generation (StoWGe) waveforms, and their performance was assessed across multiple time-bandwidth products and sidelobe-regions for two center frequencies, Fc = 30 Ghz and Fc = 3.5 Ghz. The MMF performance was characterized using SNR loss and sidelobe depth over hundreds of trails. It is observed that the variability in SNR and sidelobe depth decreases as the waveform time-bandwdith product and the sidelobe region targeted for minimization increase, although the Fc = 3.5 GHz cases exhibited a plateau in achievable sidelobe depth. Additional validation using 1000-trail histograms and loop-back testing confirmed the robustness for the fixed MMF approach for higher time-bandwidth product stochastic waveforms. Where, overall, the results demonstrate that a fixed MMF strategy is feasible for stochastic waveforms when the time-bandwdith product and sidelobe region are sufficiently large. Furthermore, the Projection-based MMF provides a suboptimal alternative to the optimal MMF as it achieves comparable MMF performance when constrained to similar SNR-loss and may be desirable when the size of the domination eigenvalues is small relative to the filter length and can be efficiency obtained.
Past Defense Notices
MAHMOOD HAMEED
Nonlinear Mixing in Optical Multicarrier SystemsWhen & Where:
246 Nichols Hall
Committee Members:
Ron Hui, ChairShannon Blunt
Erik Perrins
Alessandro Salandrino
Carey Johnson
Abstract
Efficient use of the vast spectrum offered by fiber-optic links by an end user with relatively small bandwidth requirement is possible by partitioning a high speed signal in a wavelength channel into multiple low-rate subcarriers. Multicarrier systems not only ensure efficient use of optical and electrical components, but also tolerate transmission impairments. The purpose of this research is to experimentally understand and minimize the impact of mixing among subcarriers in Radio-Over-Fiber (RoF) and direct detection systems, involving a nonlinear component such as a semiconductor optical amplifier. We also analyze impact of clipping and quantization on multicarrier signals and compare electrical bandwidth utilization of two popular multiplexing techniques in orthogonal frequency division multiplexing (OFDM) and Nyquist modulation.
For an OFDM-RoF system, we present a novel technique that minimizes the RF domain signal-signal beat interference (SSBI), relaxes the phase noise requirement on the RF carrier, realizes the full potential of the optical heterodyne technique, and increases the performance-to-cost ratio of RoF systems. We demonstrate a RoF network that shares the same RF carrier for both downlink and uplink, avoiding the need of an additional RF oscillator in the customer unit.
For direct detection systems, we first experimentally compare performance degradations of coherent optical OFDM and single carrier Nyquist pulse modulated systems in a nonlinear environment. We then experimentally evaluate the performance of signal-signal beat interference (SSBI) compensation technique in the presence of semiconductor optical amplifier (SOA) induced nonlinearities for a multicarrier optical system with direct detection. We show that SSBI contamination can be removed from the data signal to a large extent when the optical system operates in the linear region, especially when the carrier-to-signal power ratio is low.
SUSOBHAN DAS
Tunable Nano-photonic DevicesWhen & Where:
246 Nichols Hall
Committee Members:
Ron Hui, ChairAlessandro Salandrino
Chris Allen
Jim Stiles
Judy Wu
Abstract
In nano-photonics, the control of optical signals is based on tuning of the material optical properties in which the electromagnetic field propagates, and thus the choice of materials and of the physical modulation mechanism plays a crucial role. Several materials such as graphene, Indium Tin Oxide (ITO), and vanadium di-oxide (VO2) investigated here have attracted a great deal of attention in the nanophotonic community because of their remarkable tunability. This dissertation will include both theoretical modeling and experimental characterization of functional electro-optic materials and their applications in guided-wave photonic structures.
We have characterized the complex index of graphene in near infrared (NIR) wavelength through the reflectivity measurement on a SiO2/Si substrate. The measured complex indices as the function of the applied gate electric voltage agreed with the prediction of the Kubo formula.
We have performed the mathematical modeling of permittivity of ITO based on the Drude Model. Results show that ITO can be used as a plasmonic material and performs better than noble metals for applications in NIR wavelength region. Additionally, the permittivity of ITO can be tuned by carrier density change through applied voltage. An electro-optic modulator (EOM) based on plasmonically enhanced graphene has been proposed and modeled. We show that the tuning of graphene chemical potential through electrical gating is able to switch on and off the ITO plasmonic resonance. This mechanism enables dramatically increased electro-absorption efficiency.
Another novel photonic structure we are investigating is a multimode EOM based on the electrically tuned optical absorption of ITO in NIR wavelengths. The capability of mode-multiplexing increases the functionality per area in a nanophotonic chip. Proper design of ITO structure based on the profiles of y-polarized TE11 and TE21 modes allows the modulation of both modes simultaneously and differentially.
We have experimentally demonstrated the ultrafast changes of optical properties associated with dielectric-to-metal phase transition of VO2. This measurement is based on a fiber-optic pump-probe setup in NIR wavelength. Instantaneous optical phase modulation of the probe was demonstrated during pump pulse leading edge, which could be converted into an intensity modulation of the probe through an optical frequency discriminator
NIHARIKA DIVEKAR
Feature Extraction for Alias ResolutionWhen & Where:
2001B Eaton Hall
Committee Members:
Joseph Evans, ChairGary Minden
Benjamin Ewy
Abstract
Alias resolution or disambiguation is the process of determining which IP addresses belong to the same router. The focus of this project is the feature extraction aspect of the AliasCluster alias resolution technique. This technique uses five features extracted from traceroutes and uses a Naive Bayesian approach to resolve router aliases. The features extracted are the common subnet, percentage out-degree match for hop count ≤ 3, percentage out-degree match for hop count ≤ 4, percentage hop-count match for hop count ≤ 3, and percentage hop-count match for hop count ≤ 4. Using traceroutes from publicly available databases, the common subnet feature is determined by finding the number of bits common to two addresses, and the out-degree match is found by checking the number of interfaces in the downpath that appear in common to two addresses. The hop-count match is determined in a approach similar to the out-degree match, with an additional condition that the common interfaces must appear at the same hop count. In this project, algorithms to extract these features are implemented in Python and the feature distributions are compared to those described in the original AliasCluster work.
HAO CHEN
Mutual Information Accumulation over Wireless Networks: Fundamentals, Applications, and ImplementationWhen & Where:
246 Nichols Hall
Committee Members:
Lingjia Liu, ChairShannon Blunt
Victor Frost
Erik Perrins
Zsolt Talata
Abstract
Future wireless networks will face a compound challenge of supporting large traffic volumes, providing ultra-reliable and low latency connections to ultra-dense mobile devices. To meet this challenge, various new technologies have been introduced among which mutual-information accumulation (MIA), an advanced physical (PHY) layer coding technique, has been shown to significantly improve the network performance. Since the PHY layer is the fundamental layer, MIA could potentially impact various network layers of a wireless network. Accordingly, the understanding of improving network design based on MIA is far from being fully developed. In the proposed research, we target to 1) apply MIA techniques to various wireless networks such as cognitive radio networks, device-to-device networks, etc; 2) mathematically characterize the performance of such networks employing MIA; 3) use hardware to demonstrate the performance of MIA for a simple wireless network using the Universal Software Radio Peripherals (USRPs).
BHARATH ELLURU
Measuring Firmware of An Embedded DeviceWhen & Where:
2001B Eaton Hall
Committee Members:
Perry Alexander, ChairJerzy Grzymala-Busse
Prasad Kulkarni
Abstract
System Security has been one of the primary focus areas for embedded devices in recent times. The pervasion of embedded devices over a wide range of applications ranging from routers to RFID badge controls emphasizes the need for System Security. Any security compromise may result in manipulation, damage or loss of crucial data leading to unwarranted results. A conventional approach towards system security is the use of static analysis tools on source code. However, very few of these tools operate at the system level. This project envisions measuring (Looking at a given device and analyzing what is present)firmware of Gumstix, an embedded device running poky version of Linux and build a model that serves as an input to Action Notation Modelling Language (ANML) planner. An ANML planner can be later on used to generate a check list of vulnerabilities, which is out of scope for this project.
PENG SENG TAN
Addressing Spectrum Congestion by Spectrally-Cognizant Radar DesignWhen & Where:
250 Nichols Hall
Committee Members:
Jim Stiles, ChairShannon Blunt
Chris Allen
Lingjia Liu
Tyrone Duncan
Abstract
Due to the need for greater Radio Frequency (RF) spectrum by wireless communication industries such as mobile telephony, cable/satellite and wireless internet as a result of growing consumer base and demands, it has led to the issue of spectrum congestion as radar systems have traditionally maintain the largest share of the RF spectrum. To resolve the spectrum congestion problem, it has become even necessary for users from both types of systems to coexist within a finite spectrum allocation. However, this then leads to other problems such as the increased likelihood of mutual interference experienced by all users that are coexisting within the finite spectrum.
In this dissertation, we propose to address the problem of spectrum congestion via two independent approaches. The first approach involves designing an intelligent scheme to perform spectrum reallocation to radar systems such that the range resolution performance can be maintained with a smaller resulting bandwidth but at a cost of degraded sidelobe performance. The second approach involves designing a radar waveform that possesses good spectral containment property by utilizing the framework of Poly-phased coded Frequency Modulated (PCFM) waveforms such that the waveform will mitigate the issue of interference experienced by other users coexisting within the same band.
LEI YANG
Design and Analysis of Low-Latency Anonymous Communications for Big Data ApplicationsWhen & Where:
246 Nichols Hall
Committee Members:
Fengjun Li, ChairLuke Huan
Prasad Kulkarni
James Sterbenz
Yong Zeng
Abstract
Although the Internet tremendously facilitates online interaction and information exchange beyond geographic boundaries, it also enlarges attack surface for adversaries to sniff users’ privacy such as who you are, who you are talking to, and what you are saying from their communication activities over the open networks. The goal of anonymous communication networks is to protect the identity and location of a communication participant from being learned by the other participant or any third party. Tor is a most popular low-latency anonymity network. While Tor provides good privacy protection to millions of users on a daily basis, its performance and security issues are widely recognized. We anticipate that big data applications, such as anonymous video conferencing, will pose a large amount of extra traffic to Tor. The performance problem becomes a biggest obstacle impeding Tor’s further expansion, which will be aggravated in the big data era. On the other hand, it is well known that Tor is vulnerable to traffic analysis attacks, especially the end-to-end traffic confirmation attack.
In this proposal, we target the problems discussed above and propose a solution suite to address them correspondingly. We first explore the utilization of resources and find that a large portion of low-bandwidth relays are under-utilized. Therefore, we propose a multipath routing scheme to use idle resources to support bandwidth-intensive applications, which are the efforts that we make to solve the performance problems in general Tor services. To further improve the performance, we propose to enable differentiated services in Tor. The current Tor system treats clients’ requests equally and provides the same level of protection, neglecting the heterogeneity in individuals’ anonymity needs. To address this problem, we propose a learning-based solution that can automatically recognize users’ different anonymity needs for different applications and integrates it into the currently multipath Tor design to support dynamic, self-configurable anonymous communication. Then, we propose a multipath-routing based architecture for Tor hidden services to enhance the resistance of Tor hidden services against traffic analysis attacks.
MASUD AZIZ
Navigation for UAVs using Signals of OpportunityWhen & Where:
246 Nichols Hall
Committee Members:
Chris Allen, ChairShannon Blunt
Ron Hui
Heechul Yun
Shawn Keshmiri
Abstract
The reliance of Unmanned Aerial Vehicles (UAVs) on Global Navigation Satellite System (GNSS) for autonomous operation represents a significant vulnerability to their reliable and secure operation due to signal interference, both incidental (e.g. terrain shadowing, ionospheric scintillation) and malicious (e.g. jamming, spoofing). An accurate and reliable alternative UAV navigation system is proposed that exploits Signals of Opportunity (SOP) thus offering superior signal strength and spatial diversity compared to satellite signals. Given prior knowledge of the transmitter's position and signal characteristics, the proposed technique utilizes triangulation to estimate the receiver's position. Dual antenna interferometry provides the received signals' Angle of Arrival (AoA) required for triangulation. Reliance on precise knowledge of the antenna system's orientation is removed by combining AoAs from different transmitters to obtain a differential Angles of Arrival (dAoAs). Analysis, simulation, and ground-based experimental techniques are used to characterize system performance; a path to miniaturized system integration is also presented. Results from these ground-based experiments show that when the received signal-to-noise ratio (SNR) is above about 45 dB (typically in within 30 km of the transmitters), the proposed method estimates the receiver's position uncertainty range from less than 20 m to about 60 m with an update rate of 10 Hz.
YAN LI
Joint Angle and Delay Estimation for 3D Massive MIMO Systems Based on Parametric Channel ModelingWhen & Where:
129 Nichols
Committee Members:
Lingjia Liu, ChairShannon Blunt
Erik Perrins
Abstract
Mobile data traffic is predicted to have an exponential growth in the future. In order to meet the challenge as well as the form factor limitation on the base station, 3D “massive MIMO” has been proposed as one of the enabling technologies to significantly increase the spectral efficiency of a wireless system. In “massive MIMO ” systems, a base station will rely on the uplink sounding signals from mobile stations to figure out the spatial information to perform MIMO beam-forming. Accordingly, multi-dimensional parameter estimation of a MIMO wireless channel becomes crucial for such systems to realize the predicted capacity gains.
In this thesis, we study separated and joint angle and delay estimation for 3D “massive MIMO” systems in mobile wireless communications. To be specific, we first introduce a separated low complexity time delay and angle estimation algorithm based on unitary transformation and derive the mean square error (MSE) for delay and angle estimation in the millimeter wave massive MIMO system. Furthermore, a matrix-based ESPRIT-type algorithm is applied to jointly estimate delay and angle, the mean square error (MSE) of which is also analyzed. Finally, we found that azimuth estimation is more vulnerable compared to elevation estimation. Simulation results suggest that the dimension of the underlying antenna array at the base station plays a critical role in determining the estimation performance. These insights will be useful for designing practical “massive MIMO” systems in future mobile wireless communications.
CENK SAHIN
On Fundamental Performance Limits of Delay-Sensitive Wireless CommunicationsWhen & Where:
246 Nichols Hall
Committee Members:
Erik Perrins, ChairLingjia Liu
Shannon Blunt
Victor Frost
Zsolt Talata
Abstract
Mobile traffic is expected to grow at an annual compound rate of 57% until 2019, while among the data types that account for this growth mobile video has the highest growth rate. Since a significant portion of mobile video traffic are delay-sensitive, delay-sensitive traffic will play a critical role in future wireless communications. Future mobile wireless systems will face the dual challenge of supporting large traffic volume while providing reliable service for various kinds of delay-sensitive applications (e.g., real-time conversational video, voice-over-IP, and online gaming). Past work on delay-sensitive communications has overlooked physical-layer considerations such as modulation and coding scheme (MCS), probability of decoding error, and coding delay by employing oversimplified models for the physical-layer. With the proposed research we aim to bridge information theory, communication theory and queueing theory by jointly considering queueing delay violation probability and probability of decoding error to identify fundamental trade-offs among wireless system parameters such as MCS, code blocklength, user perceived quality of service, channel fading speed, and average signal-to-noise ratio.
We focus on the case where the channel state information is available only at the receiver, and model the underlying wireless channel by a finite-state Markov chain (FSMC). First, we derive the dispersion of the FSMC model of the Rayleigh fading channel, and the dispersion of parallel additive white Gaussian noise (AWGN) channels with discrete input alphabets (e.g., pulse amplitude modulation). The FSMC dispersion is used to track the probability of decoding error and the coding delay for a given MCS. The dispersion of parallel AWGN channels is used to track the operation of incremental redundancy type hybrid automatic request (IR-HARQ) over the Rayleigh fading channel, and hence to characterize the probability of decoding error and the coding delay of IR-HARQ for a given MCS. Second, we focus on a queueing system where data packets arrive at the transmitter, wait in the queue, and are transmitted over the Rayleigh fading channel with IR-HARQ. We invoke a two-dimensional discrete-time Markov process and develop a recursive algorithm to characterize the system throughput for a given MCS under queueing delay violation probability, and probability of decoding error constraints.