Defense Notices
All students and faculty are welcome to attend the final defense of EECS graduate students completing their M.S. or Ph.D. degrees. Defense notices for M.S./Ph.D. presentations for this year and several previous years are listed below in reverse chronological order.
Students who are nearing the completion of their M.S./Ph.D. research should schedule their final defenses through the EECS graduate office at least THREE WEEKS PRIOR to their presentation date so that there is time to complete the degree requirements check, and post the presentation announcement online.
Upcoming Defense Notices
Muhammad Momin Rahman
Development of a Signal Flow Graph-Based De-Embedding Framework for Broadband Passive Linear Multiport RF & Microwave Networks with Applications to Power SplittersWhen & Where:
Nichols Hall, Room 317 (Richard K. Moore Conference Room)
Committee Members:
Carl Leuschen, ChairKenneth Demarest
Fernando Rodriguez-Morales
Abstract
Discrete passive components, including resistors, capacitors, inductors, and transformers, are fundamental to broadband 75-Ω radio-frequency (RF) systems, particularly in cable television (CATV) and hybrid fiber-coaxial (HFC) networks. These components are incorporated into power splitters, couplers, power inserters, and amplifiers to achieve desired frequency responses, impedance matching, and signal transmission characteristics. However, their electrical behavior becomes increasingly complex at higher frequencies due to parasitic resistance, inductance, capacitance, electromagnetic coupling, and distributed transmission-line effects. Consequently, accurate broadband characterization is essential for predicting component behavior and developing representative RF circuit models for simulation purposes.
A significant challenge arises when characterizing passive components with limited or unavailable manufacturer specifications, particularly when existing component inventories must be evaluated for broadband applications. Conventional measurement instruments, including digital multimeters, LCR meters, oscilloscopes, and function generators, generally lack the frequency range required for comprehensive RF characterization from 5 MHz to 3 GHz. Vector network analyzers (VNAs) enable complex scattering-parameter measurements across this frequency range; however, the measured response includes contributions from test fixtures, interconnections, and parasitic discontinuities that must be distinguished from the intrinsic response of the device under test (DUT).
This project investigates the development of a signal flow graph (SFG)-based de-embedding framework for broadband passive linear multiport RF networks. The methodology incorporates series-through and shunt-through DUT (CPWG) fixture configurations, conventional Open-Short and Short-Open de-embedding techniques, followed by lumped-element and distributed transmission-line representations of fixture parasitics. Scattering-parameter and ABCD-parameter analysis are employed to characterize fixture responses, while signal flow graph derivations provide a mathematical basis for analyzing interconnected multiport networks. Particular attention is given to fixture asymmetry, impedance discontinuities, and multiple signal propagation paths that complicate the extension of conventional two-port characterization methods to higher-order networks.
Experimental validation is conducted through the characterization of passive components with published impedance and quality-factor characteristics, enabling comparisons between extracted measurements, equivalent-circuit models, and manufacturer reference data. The methodology is subsequently applied to broadband power splitter networks used in CATV/HFC systems to investigate the accuracy and applicability of the proposed multiport de-embedding framework. The project aims to establish a systematic approach to broadband passive component characterization that integrates fixture modeling, network theory, and experimental measurement while reducing dependence on proprietary characterization data.
Fairuz Shadmani Shishir
Efficient and Privacy-Preserving Biomedical AI: From Precision Therapeutics Design to Private Clinical PredictionWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
Sumaiya Shomaji, ChairTamzidul Hoque
Cuncong Zhong
Bishnu Sarker
Michael Hageman
Abstract
Accurate protein characterization, precision therapeutics design, and privacy-preserving clinical modeling are important challenges in biomedical artificial intelligence (AI). Addressing these challenges requires computational frameworks that are not only accurate and scalable but also capable of supporting reliable decision-making. This dissertation develops efficient, scalable, and reliable computational frameworks across three areas: Computational characterization of proteins, precision therapeutics design, and privacy-aware clinical representation learning. The first part of this dissertation focuses on efficient protein characterization at both the sequence and residue levels. GPCR-SLM, a knowledge-distilled small protein language model, classifies G-protein-coupled receptors (GPCRs), a family targeted by approximately 35% of FDA-approved drugs. Across 86 families, GPCR-SLM achieves 99% accuracy, outperforming BLAST (86.4%) and HMMER (91%), with a 33.5-fold speedup over large protein language models. Extending characterization to the residue level, a protein-metal-ion binding site prediction framework evaluates five protein language models and incorporates positional encoding to capture long-range dependencies. Under 10-fold cross-validation, it achieves a Matthews correlation coefficient of 0.89, with precision, recall, and F1 scores exceeding 95% across six metal ions.
Building on these protein characterization methods, the second part advances precision therapeutics design through uncertainty quantification and generative learning for therapeutic antibodies. NbBayesLM combines protein language model embeddings and physicochemical descriptors in a Bayesian neural network to predict nanobody thermostability. Evaluated on 10,630 VHH sequences, it achieves a mean absolute error of 1.89C and an R2 of 0.67 while estimating epistemic and aleatoric uncertainty to support candidate prioritization. CIgFlow employs classifier-free guidance to generate de novo, antigen-conditioned antibody sequences without fixed scaffolds or paired structural data. Generated sequences achieve a median OASis humanness score of 0.90 and mean predicted local distance difference test (pLDDT) score of 85.0, demonstrating promising novelty and diversity. The third part addresses privacy-aware clinical modeling using electrocardiograms (ECGs), which encode diagnostic information and sensitive demographic attributes. A variational autoencoder with dual discriminators suppresses demographic information while preserving clinically relevant representations.
Collectively, this dissertation advances efficient protein representation learning, computational antibody design, and privacy-preserving clinical AI, contributing methodological foundations for trustworthy biomedical applications.
Arturo Solorio
Performance Analysis of Mismatched Filtering for Stochastic WaveformsWhen & Where:
Nichols Hall, Room 246 (Executive Conference Room)
Committee Members:
Patrick McCormick, ChairShannon Blunt
Charles Mohr
Abstract
Mismatched filtering (MMF) is a widely used pulse compression technique that reduces cross-correlation sidelobe levels at the cost of some loss in signal-to-noise ratio (SNR). Applying MMF to stochastically generated radar waveforms makes the filter's performance inherently random, which can be problematic if the variability is excessive. As well as the computational cost being relatively high, as per pulse, a new MMF optimization is required. In this thesis, the feasibility of a fixed MMF strategy for stochastic radar waveforms to reduce computational cost is investigated. Two MMF formulations were evaluated, the optimal MMF (Diagonal Loaded Filter) and a projection-based MMF. Both filters were designed to minimize sidelobe energy within specified regions of the Cross-Ambiguity Function (CAF) for Stochastic Waveform Generation (StoWGe) waveforms, and their performance was assessed across multiple time-bandwidth products and sidelobe-regions for two center frequencies, Fc = 30 Ghz and Fc = 3.5 Ghz. The MMF performance was characterized using SNR loss and sidelobe depth over hundreds of trails. It is observed that the variability in SNR and sidelobe depth decreases as the waveform time-bandwdith product and the sidelobe region targeted for minimization increase, although the Fc = 3.5 GHz cases exhibited a plateau in achievable sidelobe depth. Additional validation using 1000-trail histograms and loop-back testing confirmed the robustness for the fixed MMF approach for higher time-bandwidth product stochastic waveforms. Where, overall, the results demonstrate that a fixed MMF strategy is feasible for stochastic waveforms when the time-bandwdith product and sidelobe region are sufficiently large. Furthermore, the Projection-based MMF provides a suboptimal alternative to the optimal MMF as it achieves comparable MMF performance when constrained to similar SNR-loss and may be desirable when the size of the domination eigenvalues is small relative to the filter length and can be efficiency obtained.
Past Defense Notices
PEGAH NOKHIZ
Understanding User Behavior in Social Networks Using Quantified Moral FoundationsWhen & Where:
246 Nichols Hall
Committee Members:
Fengjun Li, ChairBo Luo
Cuncong Zhong
Abstract
Moral inclinations expressed in user-generated content such as online reviews or tweets can provide useful insights to understand users’ behavior and activities in social networks, for example, to predict users’ rating behavior, perform customer feedback mining, and study users' tendency to spread abusive content on these social platforms. In this work, we want to answer two important research questions. First, if the moral attributes of social network data can provide additional useful information about users' behavior and how to utilize this information to enhance our understanding. To answer this question, we used the Moral FoundationsTheory and Doc2Vec, a Natural Language Processing technique, to compute the quantified moral loadings of user-generated textual contents in social networks. We used conditional relative frequency and the correlations between the moral foundations as two measures to study the moral break down of the social network data, utilizing a dataset of Yelp reviews and a dataset of tweets on abusive user-generated content. Our findings indicated that these moral features are tightly bound with users' behavior in social networks. The second question we want to answer is if we can use the quantified moral loadings as new boosting features to improve the differentiation, classification, and prediction of social network activities. To test our hypothesis, we adopted our new moral features in a multi-class classification approach to distinguish hateful and offensive tweets in a labeled dataset, and compared with the baseline approach that only uses conventional text mining features such as tf-idf features, Part of Speech (PoS) tags, etc. Our findings demonstrated that the moral features improved the performance of the baseline approach in terms of precision, recall, and F-measure.
MUSTAFA AL-QADI
Laser Phase Noise and Performance of High-Speed Optical Communication SystemsWhen & Where:
2001B Eaton Hall
Committee Members:
Ron Hui, ChairChris Allen
Victor Frost
Erik Perrins
Jie Han*
Abstract
The non-ending growth of data traffic resulting from the continuing emergence of high-data-rate-demanding applications sets huge capacity requirements on optical interconnects and transport networks. This requires optical communication schemes in these networks to make the best possible use of the available optical spectrum per a single optical channel to enable transmission of multiple tens of tera-bits per second per a single fiber core in high capacity transport networks. Therefore, advanced modulation formats are required to be used in conjunction with energy-efficient and robust transceiver schemes. Important challenges facing these goals are the stringent requirements on the characteristics of optical components comprising these systems. Especially the laser sources. Laser phase noise is one of the most important performance-limiting factors in systems with high spectral efficiency. In this research work, we study the effects of different laser phase noise characteristics on the performance of different optical communication schemes. A novel, simple and accurate phase noise characterization technique is proposed. Experimental results show that the proposed technique is very accurate in estimating the performance of lasers in coherent systems employing digital phase recovery techniques. A novel multi-heterodyne scheme for characterizing the phase noise of laser frequency comb sources is also proposed and validated by experimental results. This proposed scheme is the first one of its type capable of measuring the differential phase noise between multiple spectral lines instantaneously by a single measurement. Moreover, extended relations between system performance and detailed characteristics of laser phase noise are also analyzed and modeled. The results of this study show that the commonly-used metric to estimate the performance of lasers with a specific phase recovery scheme, linewidth-symbol-period product, is not necessarily accurate for all types of lasers, and description of FM-noise power spectral profile is required for accurate performance estimation. We also propose an energy- and cost-efficient transmission scheme suitable for metro and long-reach data-center-interconnect links based on direct detection of field-modulated optical signals with advanced modulation formats, allowing for higher spectral efficiency. The proposed system combines the Kramers-Kronig coherent receiver technique, with the use of quantum-dot multi-mode laser sources, to generate and transmit multi-channel optical signals using a single diode laser source. Experimental results of the proposed system show that high modulation formats can be employed, with high robustness against laser phase noise and frequency drifting.
MARK GREBE
Domain Specific Languages for Small Embedded SystemsWhen & Where:
250 Nichols Hall
Committee Members:
Andy Gill, ChairPerry Alexander
Prasad Kulkarni
Suzanne Shontz
Kyle Camarda
Abstract
Resource limited embedded systems provide a great challenge to programming using functional languages. Although these embedded systems cannot be programmed directly with Haskell, I show that an embedded domain specific language is able to be used to program them, and provides a user friendly environment for both prototyping and full development. The Arduino line of microcontroller boards provide a versatile, low cost and popular platform for development of these resource limited systems, and I use these boards as the platform for my DSL research.
First, I provide a shallowly embedded domain specific language, and a firmware interpreter, allowing the user to program the Arduino while tethered to a host computer. Shallow EDSLs allow a programmer to program using many of the features of a host language and its syntax, but sacrifice performance. Next, I add a deeply embedded version, allowing the interpreter to run standalone from the host computer, as well as allowing the code to be compiled to C and then machine code for efficient operation. Deep EDSLs provide better performance and flexibility, through the ability to manipulate the abstract syntax tree of the DSL program, but sacrifice syntactical similarity to the host language. Using Haskino, my EDSL designed for Arduino microcontrollers, and a compiler plugin for the Haskell GHC compiler, I show a method for combining the best aspects of shallow and deep EDSLs. The programmer is able to write in the shallow EDSL, and have it automatically transformed into the deep EDSL. This allows the EDSL user to benefit from powerful aspects of the host language, Haskell, while meeting the demanding resource constraints of the small embedded processing environment.
ALI ABUSHAIBA
Extremum Seeking Maximum Power Point Tracking for a Stand-Alone and Grid-Connected Photovoltaic SystemsWhen & Where:
Room 1 Eaton Hall
Committee Members:
Reza Ahmadi, ChairKen Demarest
Glenn Prescott
Alessandro Salandrino
Prajna Dhar*
Abstract
Energy harvesting from solar sources in an attempt to increase efficiency has sparked interest in many communities to develop more energy harvesting applications for renewable energy topics. Advanced technical methods are required to ensure the maximum available power is harnessed from the photovoltaic (PV) system. This dissertation proposed a new discrete-in-time extremum-seeking (ES) based technique for tracking the maximum power point of a photovoltaic array. The proposed method is a true maximum power point tracker that can be implemented with reasonable processing effort on an expensive digital controller. The dissertation presents a stability analysis of the proposed method to guarantee the convergence of the algorithm.
Two types of PV systems were designed and comprehensive frame work of control design was considered for a stand-alone and a three-phase grid connected system.
Grid-tied systems commonly have a two-stage power electronics interface which is necessitated due to the inherent limitation of the DC-AC (Inverter) power converging stage. However, a one stage converter topology, denoted as Quasi-Z-source inverter (q-ZSI) was selected that interface the PV panel which overcomes the inverter limitations to harvest the maximum available power.
A powerful control scheme called Model Predictive Control with Finite Set (MPC-FS) was designed to control the grid connected system. The predictive control was selected to achieve a robust controller with superior dynamic response in conjunction with the extremum-seeking algorithm to enhance the system behavior.
The proposed method exhibited better performance in comparison to conventional Maximum Power Point Tracking (MPPT) methods and require less computational effort than the complex mathematical methods.
JUSTIN DAWSON
The Remote MonadWhen & Where:
246 Nichols Hall
Committee Members:
Andy Gill, ChairPerry Alexander
Prasad Kulkarni
Bo Luo
Kyle Camarda
Abstract
Remote Procedure Calls are an integral part of the internet of things and cloud computing. However, remote procedures, by their very nature, have an expensive overhead cost of a network round trip. There have been many optimizations to amortize the network overhead cost, including asynchronous remote calls and batching requests together.
In this dissertation, we present a principled way to batch procedure calls together, called the Remote Monad. The support for monadic structures in languages such as Haskell can be utilized to build a staging mechanism for chains of remote procedures. Our specific formulation of remote monads uses natural transformations to make modular and composable network stacks which can automatically bundle requests into packets by breaking up monadic actions into ideal packets. By observing the properties of these primitive operations, we can leverage a number of tactics to maximize the size of the packets.
We have created a framework which has been successfully used to implement the industry standard JSON-RPC protocol, a graphical browser-based library, an efficient byte string implementation, a library to communicate with an Arduino board and database queries all of which have automatic bundling enabled. We demonstrate that the result of this investigation is that the cost of implementing bundling for remote monads can be amortized almost for free, when given a user-supplied packet transportation mechanism.
JOSEPH St AMAND
Learning to Measure: Distance Metric Learning with Structured SparsityWhen & Where:
246 Nichols Hall
Committee Members:
Arvin Agah, ChairPrasad Kulkarni
Jim Miller
Richard Wang
Bozenna Pasik-Duncan*
Abstract
Many important machine learning and data mining algorithms rely on a measure to provide a notion of distance or dissimilarity. Naive metrics such as the Euclidean distance are incapable of leveraging task-specific information, and consider all features as equal. A learned distance metric can become much more effective by honing in on structure specific to a task. Additionally, it is often extremely desirable for a metric to be sparse, as this vastly increases the ability to interpret the distance metric. In this dissertation, we explore several current problems in distance metric learning and put forth solutions which make use of structured sparsity.
The first contribution of this dissertation begins with a classic approach in distance metric learning and address a scenario where distance metric learning is typically inapplicable, i.e., the case of learning on heterogeneous data in a high-dimensional input space. We construct a projection-free distance metric learning algorithm which utilizes structured sparse updates and successfully demonstrate its application to learn a metric with over a billion parameters.
The second contribution of this dissertation focuses on an intriguing regression-based approach to distance metric learning. Under this regression approach there are two sets of parameters to learn; those which parameterize the metric, and those defining the so-called ``virtual points''. We begin with an exploration of the metric parameterization and develop a structured sparse approach to robustify the metric to noisy, corrupted, or irrelevant data. We then focus on the virtual points and develop a new method for learning the metric and constraints together in a simultaneous manner. It is demonstrate through empirical means that our approach results in a distance metric which is more effective than the current state of-the-art.
Machine learning algorithms have recently become ingrained in an incredibly diverse amount of technology. The focus of this dissertation is to develop more effective techniques to learn a distance metric. We believe that this work has the potential for broad-reaching impacts, as learning a more effective metric typically results in more accurate metric-based machine learning algorithms.
SHIVA RAMA VELMA
An Implementation of the LEM2 Algorithm Handling Numerical AttributesWhen & Where:
2001B Eaton Hall
Committee Members:
Jerzy Grzymala-Busse , ChairPerry Alexander
Prasad Kulkarni
Abstract
Data mining is a computing process of finding meaningful patterns in large sets of data. These patterns are then analyzed and used to make predictions for the future. One form of data mining is to extract rules from data sets. There are various rule induction algorithms, such as LEM1 (Learning from Examples Module Version 1), LEM2 (Learning from Examples Module Version 2) and MLEM2(Modified Learning from Examples Module Version 2). Most of the rule induction algorithms require the input data with only discretized attributes. If the input data contains numerical attributes, we need to convert them into discrete values (intervals) before performing rule induction, this process is called discretization. In this project, we discuss an implementation of LEM2 which generates the rules from data with numerical and symbolic attributes. The accuracy of the rules generated by LEM2 is measured by computing the error rate by a program called rule checker using ten-fold cross-validation and holdout methods.
SURYA NIMMAKAYALA
Heuristics to Predict and Eagerly Translate Code in DBTsWhen & Where:
250 Nichols Hall
Committee Members:
Prasad Kulkarni, ChairPerry Alexander
Fengjun Li
Bo Luo
Shawn Keshmiri*
Abstract
Dynamic Binary Translators(DBTs) have a variety of uses, like instrumentation, profiling, security, portability, etc. In order for the desired application to run with these enhanced additional features(not originally part of its design), it is to be run under the control of Dynamic Binary Translator. The application can be thought of as the guest application, to be run with in a controlled environment of the translator, which would be the host application. That way, the intended application execution flow can be enforced by the translator, thereby inducing the desired behavior in the application on the host platform(combination of Operating System and Hardware). Depending on the implementation of the translator(host application), the guest application can either have code compiled for the host platform, or a different platform. It would be the responsibility of the translator to make appropriate code/binary translation of the guest application code, to be run on the host platform.
However, there will be a run-time/execution-time overhead in the translator, when performing the additional tasks to run the guest application in a controlled fashion. This run-time overhead has been limiting the usage of DBT's on a large scale, where response times can be critical. There is often a trade-off between the benefits of using a DBT against the overall application response time. So, there is a need to research/explore ways of faster application execution through DBT's(given their large code-base).
With the evolution of the multi-core and GPU hardware architectures, paralleization of software can be employed through multiple threads, which can concurrently run parts of code and potentially doing more work at the same time. The proper design of parallel applications or parallelizing parts of existing code, can lead to faster application run-time's, by taking advantage of the hardware architecture support to parallel programs.
We explore the possibility of improving the performance of a DBT named DynamoRIO. The basic idea is to improve its performance by speeding-up the process of guest code translation, through multiple threads translating multiple pieces of code concurrently. In an ideal case, all the required code blocks for application execution would be available ahead of time(eager translation), without any wait/overhead at run-time, and also giving it the enhanced features through the DBT. For efficient run-time eager translation there is also a need for heuristics, to better predict the next likely code block to be executed. That could potentially bring down the less productive code translations at run-time. The goal is to get application speed-up through eager translation, coupled with block prediction heuristics, leading to an execution time close to that of native run.
PATRICK McCORMICK
Design and Optimization of Physical Waveform-Diverse EmissionsWhen & Where:
246 Nichols Hall
Committee Members:
Shannon Blunt, ChairChris Allen
Alessandro Salandrino
Jim Stiles
Emily Arnold*
Abstract
With the advancement of arbitrary waveform generation techniques, new radar transmission modes can be designed via precise control of the waveform's time-domain signal structure. The finer degree of emission control for a waveform (or multiple waveforms via a digital array) presents an opportunity to reduce ambiguities in the estimation of parameters within the radar backscatter. While this freedom opens the door to new emission capabilities, one must still consider the practical attributes for radar waveform design. Constraints such as constant amplitude (to maintain sufficient power efficiency) and continuous phase (for spectral containment) are still considered prerequisites for high-powered radar waveforms. These criteria are also applicable to the design of multiple waveforms emitted from an antenna array in a multiple-input multiple-output (MIMO) mode.
In this work, two spatially-diverse radar emission design methods are introduced that provide constant amplitude, spectrally-contained waveforms. The first design method, denoted as spatial modulation, designs the radar waveforms via a polyphase-coded frequency-modulated (PCFM) framework to steer the coherent mainbeam of the emission within a pulse. The second design method is an iterative scheme to generate waveforms that achieve a desired wideband and/or widebeam radar emission. However, a wideband and widebeam emission can place a portion of the emitted energy into what is known as the `invisible' space of the array, which is related to the storage of reactive power that can damage a radar transmitter. The proposed design method purposefully avoids this space and a quantity denoted as the Fractional Reactive Power (FRP) is defined to assess the quality of the result.
The design of FM waveforms via traditional gradient-based optimization methods is also considered. A waveform model is proposed that is a generalization of the PCFM implementation, denoted as coded-FM (CFM), which defines the phase of the waveform via a summation of weighted, predefined basis functions. Therefore, gradient-based methods can be used to minimize a given cost function with respect to a finite set of optimizable parameters. A generalized integrated sidelobe metric is used as the optimization cost function to minimize the correlation range sidelobes of the radar waveform.
RAKESH YELLA
A Comparison of Two Decision Tree Generating Algorithms CART and Modified ID3When & Where:
2001B Eaton Hall
Committee Members:
Jerzy Grzymala-Busse, ChairMan Kong
Prasad Kulkarni
Abstract
In Data mining, Decision Tree is a type of classification model which uses a tree-like data structure to organize the data to obtain meaningful information. We may use Decision Tree for important predictive analysis in data mining.
In this project, we compare two decision tree generating algorithms CART and the modified ID3 algorithm using different datasets with discrete and continuous numerical values. A new approach to handle the continuous numerical values is implemented in this project since the basic ID3 algorithm is inefficient in handling the continuous numerical values. In the modified ID3 algorithm, we discretize the continuous numerical values by creating cut-points. The decision trees generated by the modified algorithm contain fewer nodes and branches compared to basic ID3.
The results from the experiments indicate that there is statistically insignificant difference between CART and modified ID3 in terms of accuracy on test data. On the other hand, the size of the decision tree generated by CART is smaller than the decision tree generated by modified ID3.