Defense Notices


All students and faculty are welcome to attend the final defense of EECS graduate students completing their M.S. or Ph.D. degrees. Defense notices for M.S./Ph.D. presentations for this year and several previous years are listed below in reverse chronological order.

Students who are nearing the completion of their M.S./Ph.D. research should schedule their final defenses through the EECS graduate office at least THREE WEEKS PRIOR to their presentation date so that there is time to complete the degree requirements check, and post the presentation announcement online.

Upcoming Defense Notices

Muhammad Momin Rahman

Development of a Signal Flow Graph-Based De-Embedding Framework for Broadband Passive Linear Multiport RF & Microwave Networks with Applications to Power Splitters

When & Where:


Nichols Hall, Room 317 (Richard K. Moore Conference Room)

Committee Members:

Carl Leuschen, Chair
Kenneth Demarest
Fernando Rodriguez-Morales


Abstract

Discrete passive components, including resistors, capacitors, inductors, and transformers, are fundamental to broadband 75-Ω radio-frequency (RF) systems, particularly in cable television (CATV) and hybrid fiber-coaxial (HFC) networks. These components are incorporated into power splitters, couplers, power inserters, and amplifiers to achieve desired frequency responses, impedance matching, and signal transmission characteristics. However, their electrical behavior becomes increasingly complex at higher frequencies due to parasitic resistance, inductance, capacitance, electromagnetic coupling, and distributed transmission-line effects. Consequently, accurate broadband characterization is essential for predicting component behavior and developing representative RF circuit models for simulation purposes.

A significant challenge arises when characterizing passive components with limited or unavailable manufacturer specifications, particularly when existing component inventories must be evaluated for broadband applications. Conventional measurement instruments, including digital multimeters, LCR meters, oscilloscopes, and function generators, generally lack the frequency range required for comprehensive RF characterization from 5 MHz to 3 GHz. Vector network analyzers (VNAs) enable complex scattering-parameter measurements across this frequency range; however, the measured response includes contributions from test fixtures, interconnections, and parasitic discontinuities that must be distinguished from the intrinsic response of the device under test (DUT).

This project investigates the development of a signal flow graph (SFG)-based de-embedding framework for broadband passive linear multiport RF networks. The methodology incorporates series-through and shunt-through DUT (CPWG) fixture configurations, conventional Open-Short and Short-Open de-embedding techniques, followed by lumped-element and distributed transmission-line representations of fixture parasitics. Scattering-parameter and ABCD-parameter analysis are employed to characterize fixture responses, while signal flow graph derivations provide a mathematical basis for analyzing interconnected multiport networks. Particular attention is given to fixture asymmetry, impedance discontinuities, and multiple signal propagation paths that complicate the extension of conventional two-port characterization methods to higher-order networks.

Experimental validation is conducted through the characterization of passive components with published impedance and quality-factor characteristics, enabling comparisons between extracted measurements, equivalent-circuit models, and manufacturer reference data. The methodology is subsequently applied to broadband power splitter networks used in CATV/HFC systems to investigate the accuracy and applicability of the proposed multiport de-embedding framework. The project aims to establish a systematic approach to broadband passive component characterization that integrates fixture modeling, network theory, and experimental measurement while reducing dependence on proprietary characterization data.


Fairuz Shadmani Shishir

Efficient and Privacy-Preserving Biomedical AI: From Precision Therapeutics Design to Private Clinical Prediction

When & Where:


Eaton Hall, Room 2001B

Committee Members:

Sumaiya Shomaji, Chair
Tamzidul Hoque
Cuncong Zhong
Bishnu Sarker
Michael Hageman

Abstract

Accurate protein characterization, precision therapeutics design, and privacy-preserving clinical modeling are important challenges in biomedical artificial intelligence (AI). Addressing these challenges requires computational frameworks that are not only accurate and scalable but also capable of supporting reliable decision-making. This dissertation develops efficient, scalable, and reliable computational frameworks across three areas: Computational characterization of proteins, precision therapeutics design, and privacy-aware clinical representation learning. The first part of this dissertation focuses on efficient protein characterization at both the sequence and residue levels. GPCR-SLM, a knowledge-distilled small protein language model, classifies G-protein-coupled receptors (GPCRs), a family targeted by approximately 35% of FDA-approved drugs. Across 86 families, GPCR-SLM achieves 99% accuracy, outperforming BLAST (86.4%) and HMMER (91%), with a 33.5-fold speedup over large protein language models. Extending characterization to the residue level, a protein-metal-ion binding site prediction framework evaluates five protein language models and incorporates positional encoding to capture long-range dependencies. Under 10-fold cross-validation, it achieves a Matthews correlation coefficient of 0.89, with precision, recall, and F1 scores exceeding 95% across six metal ions.

Building on these protein characterization methods, the second part advances precision therapeutics design through uncertainty quantification and generative learning for therapeutic antibodies. NbBayesLM combines protein language model embeddings and physicochemical descriptors in a Bayesian neural network to predict nanobody thermostability. Evaluated on 10,630 VHH sequences, it achieves a mean absolute error of 1.89C and an R2 of 0.67 while estimating epistemic and aleatoric uncertainty to support candidate prioritization. CIgFlow employs classifier-free guidance to generate de novo, antigen-conditioned antibody sequences without fixed scaffolds or paired structural data. Generated sequences achieve a median OASis humanness score of 0.90 and mean predicted local distance difference test (pLDDT) score of 85.0, demonstrating promising novelty and diversity. The third part addresses privacy-aware clinical modeling using electrocardiograms (ECGs), which encode diagnostic information and sensitive demographic attributes. A variational autoencoder with dual discriminators suppresses demographic information while preserving clinically relevant representations.

Collectively, this dissertation advances efficient protein representation learning, computational antibody design, and privacy-preserving clinical AI, contributing methodological foundations for trustworthy biomedical applications.


Arturo Solorio

Performance Analysis of Mismatched Filtering for Stochastic Waveforms

When & Where:


Nichols Hall, Room 246 (Executive Conference Room)

Committee Members:

Patrick McCormick, Chair
Shannon Blunt
Charles Mohr


Abstract

Mismatched filtering (MMF) is a widely used pulse compression technique that reduces cross-correlation sidelobe levels at the cost of some loss in signal-to-noise ratio (SNR). Applying MMF to stochastically generated radar waveforms makes the filter's performance inherently random, which can be problematic if the variability is excessive. As well as the computational cost being relatively high, as per pulse, a new MMF optimization is required. In this thesis, the feasibility of a fixed MMF strategy for stochastic radar waveforms to reduce computational cost is investigated. Two MMF formulations were evaluated, the optimal MMF (Diagonal Loaded Filter) and a projection-based MMF. Both filters were designed to minimize sidelobe energy within specified regions of the Cross-Ambiguity Function (CAF) for Stochastic Waveform Generation (StoWGe) waveforms, and their performance was assessed across multiple time-bandwidth products and sidelobe-regions for two center frequencies, Fc = 30 Ghz and Fc  = 3.5 Ghz. The MMF performance was characterized using SNR loss and sidelobe depth over hundreds of trails. It is observed that the variability in SNR and sidelobe depth decreases as the waveform time-bandwdith product and the sidelobe region targeted for minimization increase, although the Fc = 3.5 GHz cases exhibited a plateau in achievable sidelobe depth. Additional validation using 1000-trail histograms and loop-back testing confirmed the robustness for the fixed MMF approach for higher time-bandwidth product stochastic waveforms. Where, overall, the results demonstrate that a fixed MMF strategy is feasible for stochastic waveforms when the time-bandwdith product and sidelobe region are sufficiently large. Furthermore, the Projection-based MMF provides a suboptimal alternative to the optimal MMF as it achieves comparable MMF performance when constrained to similar SNR-loss and may be desirable when the size of the domination eigenvalues is small relative to the filter length and can be efficiency obtained.


Past Defense Notices

Dates

SUMANT PATHAK

A Performance and Channel Spacing Analysis of LDPC Coded APSK

When & Where:


246 Nichols Hall

Committee Members:

Erik Perrins, Chair
Shannon Blunt
Taejoon Kim


Abstract

Amplitude-Phase Shift Keying (APSK) is a linear modulation format suitable for use in aeronautical telemetry due to it’s low peak-to-average power ratio (PAPR). How- ever, since the PAPR of APSK is not exactly unity (0 dB) in practice it must be used with power amplifiers operating with backoff. To compensate for the loss in power efficiency this work considers the pairing of Low-Density Parity Check (LDPC) codes with APSK. We consider the combinations of 16 and 32-APSK with rate 1/2, 2/3, 3/4, and 4/5 AR4JA LDPC codes with optimal and sub-optimal reduced complexity decoding algorithms. The loss in power efficiency due to sub-optimal decoding is characterized and the overall performance is compared to SOQPSK-TG to approximate the backoff capacity of a coded-APSK system. Another advantage of APSK based telemetry systems is the improved bandwidth efficiency. The second part of this work considers the adjacent channel spacing of a system with multiple configurations using coded-APSK and SOQPSK-TG. We consider different combinations of 16 and 32-APSK and SOQPSK-TG and find the minimum spacing between the respective waveforms that does not distort system performance.


DAVID MENAGER

A Cognitive Systems Approach to Explainable Autonomy

When & Where:


2001B Eaton Hall

Committee Members:

Arvin Agah, Chair
Dongkyu Choi, co-chair
Michael Branicky
Andrew Williams

Abstract

Human computer interaction (HCI) and artificial intelligence (AI) research have greatly progressed over the years. Work in HCI aims to create cyberphysical systems that facilitate good interactions with humans, while artificial intelligence work aims to understand the causes of intelligent behavior and reproduce them on a computer. To this point, HCI systems typically avoid the AI problem, and AI researchers typically have focused on building system that work alone or with other AI systems, but de-emphasise human collaboration. In this thesis, we examine the role of episodic memory in constructing intelligent agents that can collaborate with and learn from humans. We present our work showing that agents with episodic memory capabilities can expose their internal decision-making process to users, and that an agent can learn relational planning operators from episodic traces.


KRISHNA TEJA KARIDI

Improvements to the CReSIS HF-VHF Sounder and UHF Accumulation Radar

When & Where:


317 Nichols Hall

Committee Members:

Carl Leuschen, Chair
Fernando Rodriquez-Morales, Co-Chair
Chris Allen


Abstract

This thesis documents the improvements made to a UHF radar system for snow accumulation measurements and the implementation of an airborne HF radar system for ice sounding. The HF sounder radar was designed to operate at two discrete frequency bands centered at 14.1 MHz and 31.5 MHz with a peak power level of 1 kW, representing an order-of-magnitude increase over earlier implementations. A custom transmit/receive module was developed with a set of lumped-element impedance matching networks suitable for integration on a Twin Otter Aircraft. The system was integrated and deployed to Greenland in 2016, showing improved detection capabilities for the ice/bottom interface in some areas of Jakobshavn Glacier and the potential for cross-track aperture formation to mitigate surface clutter. The performance of the UHF radar (also known as the CReSIS Accumulation radar) was significantly improved by transitioning from a single channel realization with 5-10 Watts peak transmit power into a multi-channel system with 1.6 kW. This was accomplished through developing custom transmit/receive modules capable of handling 400-W peak per channel and fast switching, incorporating a high-speed waveform generator and data acquisition system, and upgrading the baluns which feed the antenna elements. We demonstrated dramatically improved observation capabilities over the course of two different field seasons in Greenland onboard the NASA P-3.

 

 


SRAVYA ATHINARAPU

Model Order Estimation and Array Calibration for Synthetic Aperture Radar Tomography

When & Where:


317 Nichols Hall

Committee Members:

Jim Stiles, Chair
John Paden, Co-Chair
Shannon Blunt


Abstract

The performance of several methods to estimate the number of source signals impinging on a sensor array are compared using a traditional simulator and their performance for synthetic aperture radar tomography is discussed as it is useful in the fields of radar and remote sensing when multichannel arrays are employed. All methods use the sum of the likelihood function with a penalty term. We consider two signal models for model selection and refer to these as suboptimal and optimal. The suboptimal model uses a simplified signal model and the model selection and direction of arrival estimation are done in separate steps. The optimal model uses the actual signal model and the model selection and direction of arrival estimation are done in the same step. In the literature, suboptimal model selection is used because of computational efficiency, but in our radar post processing we are less time constrained and we implement the optimal model for the estimation and compare the performance results. Interestingly we find several methods discussed in the literature do not work using optimal model selection, but can work if the optimal model selection is normalized. We also formulate a new penalty term, numerically tuned so that it gives optimal performance over a particular set of operating conditions, and compare this method as well. The primary contribution of this work is the development of an optimizer that finds a numerically tuned penalty term that outperforms current methods and discussion of the normalization techniques applied to optimal model selection. Simulation results show that the numerically tuned model selection criteria is optimal and that the typical methods do not do well for low snapshots which are common in radar and remote sensing applications. We apply the algorithms to data collected by the CReSIS radar depth sounder and discuss the results.

In addition to model order estimation, array model errors should be estimated to improve direction of arrival estimation. The implementation of a parametric-model is discussed for array calibration that estimates the first and second order array model errors. Simulation results for the gain, phase and location errors are discussed.


PRANJALI PARE

Development of a PCB with Amplifier and Discriminator for the Timing Detector in CMS-PPS

When & Where:


2001B Eaton Hall

Committee Members:

Chris Allen, Chair
Christophe Royon, Co-Chair
Ron Hui
Carl Leuschen

Abstract

The Compact Muon Solenoid - Precision Proton Spectrometer (CMS-PPS) detector at the Large Hadron Collider (LHC) operates at high luminosity and is designed to measure forward scattered protons resulting from proton-proton interactions involving photon and Pomeron exchange processes. The PPS uses tracking and timing detectors for these measurements. The timing detectors measure the arrival time of the protons on each side of the interaction and their difference is used to reconstruct the vertex of the interaction. A good time precision (~10ps) on the arrival time is desired to have a good precision (~2mm) on the vertex position. The time precision is approximately equal to the ratio of the Root Mean Square (RMS) noise to the slew rate of the signal obtained from the detector.

Components of the timing detector include Ultra-Fast Silicon Detector (UFSD) sensors that generate a current pulse, transimpedance amplifier with shaping, and a discriminator. This thesis discusses the circuit schematic and simulations of an amplifier designed to have a time precision and the choice and simulation of discriminators with Low Voltage Differential Signal (LVDS) outputs. Additionally, details on the Printed Circuit Board (PCB) design including arrangement of components, traces, and stackup have been discussed for a 6-layer PCB that houses these three components. The PCB board has been manufactured and test results were performed to assess the functionality.

 


AMIR MODARRESI

Network Resilience Architecture and Analysis for Smart Cities

When & Where:


246 Nichols Hall

Committee Members:

James Sterbenz, Chair
Victor Frost
Fengjun Li
Bo Luo
Cetinkaya Egemen

Abstract

The Internet of Things (IoT) is evolving rapidly to every aspect of human life including healthcare, homes, cities, and driverless vehicles that makes humans more dependent on the Internet and related infrastructure. While many researchers have studied the structure of the Internet that is resilient as a whole, new studies are required to investigate the resilience of the edge networks in which people and “things” connect to the Internet. Since the range of service requirements varies at the edge of the network, a wide variety of protocols are needed. In this research proposal, we survey standard protocols and IoT models. Next, we propose an abstract model for smart homes and cities to illustrate the heterogeneity and complexity of network structure. Our initial results show that the heterogeneity of the protocols has a direct effect on the IoT and smart city resilience. As the next step, we make a graph model from the proposed model and do graph theoretic analysis to recognize the fundamental behavior of the network to improve its robustness. We perform the process of improvement through modifying topology, adding extra nodes, and links when necessary. Finally, we will conduct various simulation studies on the model to validate its resilience.


VENKAT VADDULA

Content Analysis in Microblogging Communities

When & Where:


2001B Eaton Hall

Committee Members:

Nicole Beckage, Chair
Jerzy Grzymala-Busse
Bo Luo


Abstract

People use online social networks like Twitter to communicate and discuss a variety of topics. This makes these social platforms an import source of information. In the case of Twitter, to make sense of this source of information, understanding the content of tweets is important in understanding what is being discussed on these social platforms and how ideas and opinions of a group are coalescing around certain themes. Although there are many algorithms to classify(identify) the topics, the restricted length of the tweets and usage of jargon, abbreviations and urls make it hard to perform without immense expertise in natural language processing. To address the need for content analysis in twitter that is easily implementable, we introduce two measures based on the term frequency to identify the topics in the twitter microblogging environment. We apply these measures to the tweets with hashtags related to the Pulse night club shooting in Orlando that happened on June 12, 2016. This event is branded as both terrorist attack and hate crime and different people on twitter tweeted about this event differently forming social network communities, making this a fitting domain to explore our algorithms ability to detect the topics of community discussions on twitter.  Using community detection algorithms, we discover communities in twitter. We then use frequency statistics and Monte Carlo simulation to determine the significance of certain hashtags. We show that this approach is capable of uncovering differences in community discussions and propose this method as a means to do community based content detection.


TEJASWINI JAGARLAMUDI

Community-based Content Analysis of the Pulse Night Club Shooting

When & Where:


2001B Eaton Hall

Committee Members:

Nicole Beckage, Chair
Prasad Kulkarni
Fengjun Li


Abstract

On June 12, 2016, 49 people were killed and another 58 wounded in an attack at Pulse Nightclub in Orlando Florida. This incident was regarded as both hate crime against LGBT people and as a terrorist attack. This project focuses on analyzing tweets a week after the terrorist attack, specifically looking at how different communities within twitter were discussing this event. To understand how the twitter users in different communities are discussing this event, a set of hashtag frequency-based evaluation measures and simulations are proposed. The simulations are used to assess the specific hashtag content of a community. Using community detection algorithms and text analysis tools, significant topics that specific communities are discussing and  the topics that are being avoided by those communities are discovered.


NIHARIKA GANDHARI

A Comparative Study on Strategies of Rule Induction for Incomplete Data

When & Where:


2001B Eaton Hall

Committee Members:

Jerzy Grzymala-Busse, Chair
Perry Alexander
Bo Luo


Abstract

Rule Induction is one of the major applications of rough set theory. However, traditional rough set models cannot deal with incomplete data sets. Missing values can be handled by data pre-processing or extension of rough set models. Two data pre-processing methods and one extension of the rough set model are considered in this project. These being filling in missing values with most common data, ignoring objects by deleting records and extended discernibility matrix. The objective is to compare these methods in terms of stability and effectiveness. All three methods have same rule induction method and are analyzed based on test accuracy and missing attribute level percentage. To better understand the properties of these approaches, eight real-life data-sets with varying level of missing attribute values are used for testing. Based on the results, we discuss the relative merits of three approaches in an attempt to decide upon optimal approach. The final conclusion is that the best method is to use a pre-processing method which is filling in missing values with most common data.​


MADHU CHEGONDI

A Comparison of Leaving-one-out and Bootstrap

When & Where:


2001B Eaton Hall

Committee Members:

Jerzy Grzymala-Busse, Chair
Prasad Kulkarni
Richard Wang


Abstract

Recently machine learning has created significant advancements in many areas like health, finance, education, sports, etc. which has encouraged the development of many predictive models. In machine learning, we extract hidden, previously unknown, and potentially useful high-level information from low-level data. Cross-validation is a typical strategy for estimating the performance. It simulates the process of fitting to different datasets and seeing how different predictions can be. In this project, we review accuracy estimation methods and compare two resampling methods, such as leaving-one-out and bootstrap. We compared these validation methods using LEM1 rule induction algorithm. Our results indicate that for real-world datasets similar to ours, bootstrap may be optimistic.