Defense Notices
All students and faculty are welcome to attend the final defense of EECS graduate students completing their M.S. or Ph.D. degrees. Defense notices for M.S./Ph.D. presentations for this year and several previous years are listed below in reverse chronological order.
Students who are nearing the completion of their M.S./Ph.D. research should schedule their final defenses through the EECS graduate office at least THREE WEEKS PRIOR to their presentation date so that there is time to complete the degree requirements check, and post the presentation announcement online.
Upcoming Defense Notices
Muhammad Momin Rahman
Development of a Signal Flow Graph-Based De-Embedding Framework for Broadband Passive Linear Multiport RF & Microwave Networks with Applications to Power SplittersWhen & Where:
Nichols Hall, Room 317 (Richard K. Moore Conference Room)
Committee Members:
Carl Leuschen, ChairKenneth Demarest
Fernando Rodriguez-Morales
Abstract
Discrete passive components, including resistors, capacitors, inductors, and transformers, are fundamental to broadband 75-Ω radio-frequency (RF) systems, particularly in cable television (CATV) and hybrid fiber-coaxial (HFC) networks. These components are incorporated into power splitters, couplers, power inserters, and amplifiers to achieve desired frequency responses, impedance matching, and signal transmission characteristics. However, their electrical behavior becomes increasingly complex at higher frequencies due to parasitic resistance, inductance, capacitance, electromagnetic coupling, and distributed transmission-line effects. Consequently, accurate broadband characterization is essential for predicting component behavior and developing representative RF circuit models for simulation purposes.
A significant challenge arises when characterizing passive components with limited or unavailable manufacturer specifications, particularly when existing component inventories must be evaluated for broadband applications. Conventional measurement instruments, including digital multimeters, LCR meters, oscilloscopes, and function generators, generally lack the frequency range required for comprehensive RF characterization from 5 MHz to 3 GHz. Vector network analyzers (VNAs) enable complex scattering-parameter measurements across this frequency range; however, the measured response includes contributions from test fixtures, interconnections, and parasitic discontinuities that must be distinguished from the intrinsic response of the device under test (DUT).
This project investigates the development of a signal flow graph (SFG)-based de-embedding framework for broadband passive linear multiport RF networks. The methodology incorporates series-through and shunt-through DUT (CPWG) fixture configurations, conventional Open-Short and Short-Open de-embedding techniques, followed by lumped-element and distributed transmission-line representations of fixture parasitics. Scattering-parameter and ABCD-parameter analysis are employed to characterize fixture responses, while signal flow graph derivations provide a mathematical basis for analyzing interconnected multiport networks. Particular attention is given to fixture asymmetry, impedance discontinuities, and multiple signal propagation paths that complicate the extension of conventional two-port characterization methods to higher-order networks.
Experimental validation is conducted through the characterization of passive components with published impedance and quality-factor characteristics, enabling comparisons between extracted measurements, equivalent-circuit models, and manufacturer reference data. The methodology is subsequently applied to broadband power splitter networks used in CATV/HFC systems to investigate the accuracy and applicability of the proposed multiport de-embedding framework. The project aims to establish a systematic approach to broadband passive component characterization that integrates fixture modeling, network theory, and experimental measurement while reducing dependence on proprietary characterization data.
Fairuz Shadmani Shishir
Efficient and Privacy-Preserving Biomedical AI: From Precision Therapeutics Design to Private Clinical PredictionWhen & Where:
Eaton Hall, Room 2001B
Committee Members:
Sumaiya Shomaji, ChairTamzidul Hoque
Cuncong Zhong
Bishnu Sarker
Michael Hageman
Abstract
Accurate protein characterization, precision therapeutics design, and privacy-preserving clinical modeling are important challenges in biomedical artificial intelligence (AI). Addressing these challenges requires computational frameworks that are not only accurate and scalable but also capable of supporting reliable decision-making. This dissertation develops efficient, scalable, and reliable computational frameworks across three areas: Computational characterization of proteins, precision therapeutics design, and privacy-aware clinical representation learning. The first part of this dissertation focuses on efficient protein characterization at both the sequence and residue levels. GPCR-SLM, a knowledge-distilled small protein language model, classifies G-protein-coupled receptors (GPCRs), a family targeted by approximately 35% of FDA-approved drugs. Across 86 families, GPCR-SLM achieves 99% accuracy, outperforming BLAST (86.4%) and HMMER (91%), with a 33.5-fold speedup over large protein language models. Extending characterization to the residue level, a protein-metal-ion binding site prediction framework evaluates five protein language models and incorporates positional encoding to capture long-range dependencies. Under 10-fold cross-validation, it achieves a Matthews correlation coefficient of 0.89, with precision, recall, and F1 scores exceeding 95% across six metal ions.
Building on these protein characterization methods, the second part advances precision therapeutics design through uncertainty quantification and generative learning for therapeutic antibodies. NbBayesLM combines protein language model embeddings and physicochemical descriptors in a Bayesian neural network to predict nanobody thermostability. Evaluated on 10,630 VHH sequences, it achieves a mean absolute error of 1.89C and an R2 of 0.67 while estimating epistemic and aleatoric uncertainty to support candidate prioritization. CIgFlow employs classifier-free guidance to generate de novo, antigen-conditioned antibody sequences without fixed scaffolds or paired structural data. Generated sequences achieve a median OASis humanness score of 0.90 and mean predicted local distance difference test (pLDDT) score of 85.0, demonstrating promising novelty and diversity. The third part addresses privacy-aware clinical modeling using electrocardiograms (ECGs), which encode diagnostic information and sensitive demographic attributes. A variational autoencoder with dual discriminators suppresses demographic information while preserving clinically relevant representations.
Collectively, this dissertation advances efficient protein representation learning, computational antibody design, and privacy-preserving clinical AI, contributing methodological foundations for trustworthy biomedical applications.
Arturo Solorio
Performance Analysis of Mismatched Filtering for Stochastic WaveformsWhen & Where:
Nichols Hall, Room 246 (Executive Conference Room)
Committee Members:
Patrick McCormick, ChairShannon Blunt
Charles Mohr
Abstract
Mismatched filtering (MMF) is a widely used pulse compression technique that reduces cross-correlation sidelobe levels at the cost of some loss in signal-to-noise ratio (SNR). Applying MMF to stochastically generated radar waveforms makes the filter's performance inherently random, which can be problematic if the variability is excessive. As well as the computational cost being relatively high, as per pulse, a new MMF optimization is required. In this thesis, the feasibility of a fixed MMF strategy for stochastic radar waveforms to reduce computational cost is investigated. Two MMF formulations were evaluated, the optimal MMF (Diagonal Loaded Filter) and a projection-based MMF. Both filters were designed to minimize sidelobe energy within specified regions of the Cross-Ambiguity Function (CAF) for Stochastic Waveform Generation (StoWGe) waveforms, and their performance was assessed across multiple time-bandwidth products and sidelobe-regions for two center frequencies, Fc = 30 Ghz and Fc = 3.5 Ghz. The MMF performance was characterized using SNR loss and sidelobe depth over hundreds of trails. It is observed that the variability in SNR and sidelobe depth decreases as the waveform time-bandwdith product and the sidelobe region targeted for minimization increase, although the Fc = 3.5 GHz cases exhibited a plateau in achievable sidelobe depth. Additional validation using 1000-trail histograms and loop-back testing confirmed the robustness for the fixed MMF approach for higher time-bandwidth product stochastic waveforms. Where, overall, the results demonstrate that a fixed MMF strategy is feasible for stochastic waveforms when the time-bandwdith product and sidelobe region are sufficiently large. Furthermore, the Projection-based MMF provides a suboptimal alternative to the optimal MMF as it achieves comparable MMF performance when constrained to similar SNR-loss and may be desirable when the size of the domination eigenvalues is small relative to the filter length and can be efficiency obtained.
Past Defense Notices
Tong Xu
Real-time DSP-enabled digital subcarrier cross-connect (DSXC) for optical communication systems and networksWhen & Where:
246 Nichols Hall
Committee Members:
Ron Hui, ChairChristopher Allen
Esam Eldin Aly
Erik Perrins
Jie Han
Abstract
Elastic optical networking (EON) is intended to offer flexible channel wavelength granularity to meet the requirement of high spectral efficiency (SE) in today’s optical networks. However, optical cross-connects (OXC) and switches based on optical wavelength division multiplexing (WDM) are not flexible enough due to the coarse bandwidth granularity imposed by optical filtering. Thus, OXC may not meet the requirements of many applications which require finer bandwidth granularities than that carried by an entire wavelength channel.
In order to achieve highly flexible and fine enough bandwidth granularities, electrical digital subcarrier cross-connect (DSXC) can be utilized in EON. As presented in this thesis, my research work focuses on the investigation and implementation of real-time digital signal processing (DSP) enabled DSXC which can dynamically assign both bandwidth and power to each individual sub-wavelength channel, known as subcarrier. This DSXC is based on digital sub-carrier multiplexing (DSCM), which is a frequency division multiplexing (FDM) technique that multiplexes a large number of digitally created subcarriers on each optical wavelength. Compared with OXC based on optical WDM, DSXC based on DSCM has much finer bandwidth granularities and flexibilities for dynamic bandwidth allocation.
Based on a field programmable gate array (FPGA) hardware platform, we have designed and implemented a real-time DSP enabled DSXC which uses Nyquist FDM as the multiplexing scheme. For the first time, we demonstrated resampling filters for channel selection and frequency translation, which enabled real-time DSXC. This circuit-based DSXC supports flexible and fine data-rate subcarrier channel granularities, offering a low latency data plane, transparency to modulation formats, and the capability of compensating transmission impairments in the digital domain. The experimentally demonstrated 8×8 DSXC makes use of a Virtex-7 FPGA platform, which supports any-to-any switching of eight subcarrier channels with mixed modulation formats and data rates. Digital resampling filters, which enable frequency selections and translations of multiple subcarrier channels, have much lower DSP complexity and reduced FPGA resources requirements (DSP slices used in FPGA) in comparison to the traditional technique based on I/Q mixing and filtering.
We have also investigated the feasibility of using the distributed arithmetic (DA) architecture for real-time DSXC to completely eliminate the need of DSP slices in FPGA implementation. For the first time, we experimentally demonstrated the implementation of real-time frequency translation and channel selection based on the DA architecture in the same FPGA platform. Compared with resampling filters that leverage multipliers, the DA-based approach eliminates the need of DSP slices in the FPGA implementation and significantly reduces the hardware cost. In addition, by requiring the time of only a few clock cycles, a DA-based resampling filter is significantly faster when compared to a conventional FIR filter whose overall latency is proportional to the filter order. The DA-based DSXC is, therefore, able to achieve not only the improved spectral efficiency, programmability of multiple orthogonal subcarrier channels, and low hardware resources requirements, but also much reduced cross-connection latency when implemented in a real-time DSP hardware platform. This reduced latency of cross-connect switching can be critically important for time-sensitive applications such as 5G mobile fronthaul, cloud radio access network (C-RAN), cloud-based robot control, tele-surgery and network gaming.
Levi Goodman
Dual Mode W-Band Radar for Range Finding, Static Clutter Suppression & Moving Target DetectionWhen & Where:
250 Nichols Hall
Committee Members:
Christopher Allen, ChairShannon Blunt
James Stiles
Abstract
Many radar applications today require accurate, real-time, unambiguous measurement of target range and radial velocity. Obstacles that frequently prevent target detection are the presence of noise and the overwhelming backscatter from other objects, referred to as clutter.
In this thesis, a method of static clutter suppression is proposed to increase detectability of moving targets in high clutter environments. An experimental dual-purpose, single-mode, monostatic FMCW radar, operating at 108 GHz, is used to map the range of stationary targets and determine range and velocity of moving targets. By transmitting a triangular waveform, which consists of alternating upchirps and downchirps, the received echo signals can be separated into two complementary data sets, an upchirp data set and a downchirp data set. In one data set, the return signals from moving targets are spectrally isolated (separated in frequency) from static clutter return signals. The static clutter signals in that first data set are then used to suppress the static clutter in the second data set, greatly improving detectability of moving targets. Once the moving target signals are recovered from each data set, they are then used to solve for target range and velocity simultaneously.
The moving target of interest for tests performed was a reusable paintball (reball). Reball range and velocity were accurately measured at distances up to 5 meters and at speeds greater than 90 m/s (200 mph) with a deceleration of approximately 0.155 m/s/ms (meters per second per millisecond). Static clutter suppression of up to 25 dB was achieved, while moving target signals only suffered a loss of about 3 dB.
Ruoting Zheng
Algorithms for Computing Maximal Consistent BlocksWhen & Where:
2001 B Eaton Hall
Committee Members:
Jerzy Grzymala-Busse, ChairPrasad Kulkarni
Bo Luo
Abstract
Rough set theory is a tool to deal with uncertain and incomplete data. It has been successfully used in classification, machine learning and automated knowledge acquisition. A maximal consistent block defined using rough set theory, is used for rule acquisition.
Maximal consistent block technique is applied to acquire knowledge in incomplete data sets by analyzing the structure of a similarity class.
The main objective of this project is to implement and compare the algorithms for computing the maximal consistent blocks. The brute force method, recursive method and hierarchical method were designed for the data sets with missing attribute values interpreted only as “do not care” conditions. In this project, we extend these algorithms so they can be applied to arbitrary interpretations of missing attribute values, and an approach for computing maximal consistent blocks on the data sets with lost values is introduced in this project. Besides, we found that the brute force method and recursive method have problems dealing with the data sets for which characteristic sets are not transitive, so the limitations of the algorithms and a simplified recursive method are provided in the project as well.
Hao Xue
Trust and Credibility in Online Social NetworksWhen & Where:
246 Nichols Hall
Committee Members:
Fengjun Li, ChairPrasad Kulkarni
Bo Luo
Cuncong Zhong
Mei Liu
Abstract
Increasing portions of people's social and communicative activities now take place in the digital world. The growth and popularity of online social networks (OSNs) have tremendously facilitate the online interaction and information exchange. Not only normal users benefit from OSNs as more people now rely online information for news, opinions, and social networking, but also companies and business owners who utilize OSNs as platforms for gathering feedback and marketing activities. As OSNs enable people to communicate more effectively, a large volume of user generated content (UGC) is produced daily. However, the freedom and ease of of publishing information online has made these systems no longer the sources of reliable information. Not only does biased and misleading information exist, financial incentives drive individual and professional spammers to insert deceptive content and promote harmful information, which jeopardizes the ecosystems of OSNs.
In this dissertation, we present our work of measuring the credibility of information and detect content polluters in OSNs. Firstly, we assume that review spammers spend less effort in maintain social connections and propose to utilize the social relationships and rating deviations to assist the computation of trustworthiness of users. Compared to numeric ratings, textual content contains richer information about the actual opinion of a user toward a target. Thus, we propose a content-based trust propagation framework by extracting the opinions expressed in review content. In addition, we discover that the surrounding network around a user could also provide valuable information about the user himself. Lastly, we study the problem of detecting social bots by utilizing the characteristics of surrounding neighborhood networks.
Casey Sader
Taming WOLF: Building a More Functional and User-Friendly FrameworkWhen & Where:
2001 B Eaton Hall
Committee Members:
Michael Branicky , ChairBo Luo
Suzanne Shontz
Abstract
Machine learning is all about automation. Many tools have been created to help data scientists automate repeated tasks and train models. These tools require varying levels of user experience to be used effectively. The ``machine learning WOrk fLow management Framework" (WOLF) aims to automate the machine learning pipeline. One of its key uses is to discover which machine learning model and hyper-parameters are the best configuration for a dataset. In this project, features were explored that could be added to make WOLF behave as a full pipeline in order to be helpful for novice and experienced data scientists alike. One feature to make WOLF more accessible is a website version that can be accessed from anywhere and make using WOLF much more intuitive. To keep WOLF aligned with the most recent trends and models, the ability to train a neural network using the TensorFlow framework and Keras library were added. This project also introduced the ability to pickle and save trained models. Designing the option for using the models to make predictions within the WOLF framework on another collection of data is a fundamental side-effect of saving the models. Understanding how the model makes predictions is a beneficial component of machine learning. This project aids in that understanding by calculating and reporting the relative importance of the dataset features for the given model. Incorporating all these additions to WOLF makes it a more functional and user-friendly framework for machine learning tasks.
Charles Mohr
Multi-Objective Optimization of FM Noise Waveforms via Generalized Frequency Template Error MetricsWhen & Where:
129 Nichols Hall
Committee Members:
Shannon Blunt, ChairChristopher Allen
James Stiles
Abstract
FM noise waveforms have been experimentally demonstrated to achieve high time bandwidth products and low autocorrelation sidelobes while achieving acceptable spectral containment in physical implementation. Still, it may be necessary to further reduce sidelobe levels for detection or improve spectral containment in the face of growing spectral use. The Frequency Template Error (FTE) and the Logarithmic Frequency Template Error (Log-FTE) metrics were conceived as means to achieve FM noise waveforms with good spectral containment and good autocorrelation sidelobes. In practice, FTE based waveform optimizations have been found to produce better autocorrelation responses at the expense of spectral containment while Log-FTE optimizations achieve excellent spectral containment and interference rejection at the expense of autocorrelation sidelobe levels. In this work, the notion of the FTE and Log-FTE metrics are considered as subsets of a broader class of frequency domain metrics collectively termed as the Generalized Frequency Template Error (GFTE). In doing so, many different P-norm based variations of the FTE and Log-FTE cost functions are extensively examined and applied via gradient descent methods to optimize polyphase-coded FM (PCFM) waveforms. The performance of the different P-norm variations of the FTE and Log-FTE cost functions are compared amongst themselves, against each other, and relative to a previous FM noise waveform design approach called Pseudo-Random Optimized FM (PRO-FM). They are evaluated in terms of their autocorrelation sidelobes, spectral containment, and their ability to realize spectral notches within the 3 dB bandwidth for the purpose of interference rejection. These comparisons are performed in both simulation and experimentally in loopback where it was found that P-norm values of 2 tend to provide the best optimization performance for both the FTE and Log-FTE optimizations except in the case of the Log-FTE optimization of a notched spectral template where a P-norm value of 3 provides the best results. In general, the FTE and Log-FTE cost functions as subsets of the GFTE provide diverse means to optimize physically robust FM noise waveforms while emphasizing different performance criteria in terms of autocorrelation sidelobes, spectral containment, and interference rejection.
Rui Cao
How good Are Probabilistic Approximations for Rule Induction from Data with Missing Attribute ValuesWhen & Where:
246 Nichols Hall
Committee Members:
Jerzy Grzymala-Busse , ChairGuanghui Wang
Cuncong Zhong
Abstract
In data mining, decision rules induced from known examples are used to classify unseen cases. There are various rule induction algorithms, such as LEM1 (Learning from Examples Module version 1), LEM2 (Learning from Examples Module version 2) and MLEM2 (Modified Learning from Examples Module version 2). In the real world, many data sets are imperfect, may be incomplete. The idea of the probabilistic approximation, has been used for many years in variable precision rough set models and similar approaches to uncertainty. The objective of this project is to test whether proper probabilistic approximations are better than concept lower and upper approximations. In this project, experiments were conducted on six incomplete data sets with lost values. We implemented the local probabilistic version of MLEM2 algorithm to induce certain and possible rules from incomplete data sets. A program called Rule Checker was also developed to classify unseen cases with induced rules and measure the classification error rate. Hold-out validation was carried out and the error rate was used as the criterion for comparison.
Lokesh Kaki
An Automatic Image Stitching Software with Customizable Parameters and a Graphical User InterfaceWhen & Where:
2001 B Eaton Hall
Committee Members:
Richard Wang, ChairEsam El-Araby
Jerzy Grzymala-Busse
Abstract
Image stitching is one of the most widely used Computer Vision algorithms with a broad range of applications, such as image stabilization, high-resolution photomosaics, object insertion, 3D image reconstruction, and satellite imaging. The process of extracting image features from each input image, determining the image matches, and then estimating the homography for each matched image is the necessary procedure for most of the feature-based image stitching techniques. In recent years, several state-of-the-art techniques like scale-invariant feature transform (SIFT), random sample consensus (RANSAC), and direct linear transformation (DLT) have been proposed for feature detection, extraction, matching, and homography estimation. However, using these algorithms with fixed parameters does not usually work well in creating seamless, natural-looking panoramas. The set of parameter values which work best for specific images may not work equally well for another set of images taken by a different camera or in varied conditions. Hence, the parameter tuning is as important as choosing the right set of algorithms for the efficient performance of any image stitching algorithm.
In this project, a graphical user interface is designed and programmed to tune a total of 32 parameters, including some of the basic ones such as straitening, cropping, setting the maximum output image size, and setting the focal length. It also contains several advanced parameters like specifying the number of RANSAC iterations, RANSAC inlier threshold, extrema threshold, Gaussian window size, etc. The image stitching algorithm used in this project comprises of SIFT, DLT, RANSAC, warping, straightening, bundle adjustment, and blending techniques. Once the given images are stitched together, the output image can be further analyzed inside the user interface by clicking on any particular point. Then, it returns the corresponding input image, which contributed to the selected point, and its GPS coordinates, altitude, and camera focal length given by its metadata. The developed software has been successfully tested on various diverse datasets, and the customized parameters with corresponding results, as well as timer logs are tabulated in this report. The software is built for both Windows and Linux operating systems as part of this project.
Mohammad Isyroqi Fathan
Comparative Study on Polyp Localization and Classification on Colonoscopy VideoWhen & Where:
250 Nichols Hall
Committee Members:
Guanghui Wang, ChairBo Luo
James Miller
Abstract
Colorectal cancer is one of the most common types of cancer with a high mortality rate. It typically develops from small clumps of benign cells called polyp. The adenomatous polyp has a higher chance of developing into cancer compared to the hyperplastic polyp. Colonoscopy is the preferred procedure for colorectal cancer screening and to minimize its risk by performing a biopsy on found polyps. Thus, a good polyp detection model can assist physicians and increase the effectiveness of colonoscopy. Several models using handcrafted features and deep learning approaches have been proposed for the polyp detection task.
In this study, we compare the performances of the previous state-of-the-art general object detection models for polyp detection and classification (into adenomatous and hyperplastic class). Specifically, we compare the performances of FasterRCNN, SSD, YOLOv3, RefineDet, RetinaNet, and FasterRCNN with DetNet backbone. This comparative study serves as an initial analysis of the effectiveness of these models and to choose a base model that we will improve further for polyp detection.
Lei Wang
I Know What You Type on Your Phone: Keystroke Inference on Android Device Using Deep LearningWhen & Where:
246 Nichols Hall
Committee Members:
Bo Luo, ChairFengjun Li
Guanghui Wang
Abstract
Given a list of smartphone sensor readings, such as accelerometer, gyroscope and light sensor, is there enough information present to predict a user’s input without access to either the raw text or keyboard log? With the increasing usage of smartphones as personal devices to access sensitive information on-the-go has put user privacy at risk. As the technology advances rapidly, smartphones now equip multiple sensors to measure user motion, temperature and brightness to provide constant feedback to applications in order to receive accurate and current weather forecast, GPS information and so on. In the ecosystem of Android, sensor reading can be accessed without user permissions and this makes Android devices vulnerable to various side-channel attacks.
In this thesis, we first create a native Android app to collect approximately 20700 keypresses from 30 volunteers. The text used for the data collection is carefully selected based on the bigram analysis we run on over 1.3 million tweets. We then present two approaches (single key press and bigram) for feature extraction, those features are constructed using accelerometer, gyroscope and light sensor readings. A deep neural network with four hidden layers is proposed as the baseline for this work, which achieves an accuracy of 47% using categorical cross entropy as the accuracy metric. A multi-view model then is proposed in the later work and multiple views are extracted and performance of the combination of each view is compared for analysis.